CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93838
OQU87871

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06730.1	EER93838	AT1G69200.1	20511297
AT3G06730.1	OQU87871	AT3G54090.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032337_P001	Maize	plastid	87.63	89.01
TraesCS4B01G074900.1	Wheat	plastid	63.92	67.39
TraesCS4D01G073500.1	Wheat	plastid	62.37	65.41
Os08t0378900-02	Rice	plastid	62.89	64.55
TraesCS4A01G240000.1	Wheat	plastid	61.86	60.61
CDY24669	Canola	mitochondrion, plastid	47.94	55.69
CDY34934	Canola	plastid	50.0	55.43
GSMUA_Achr8P27150_001	Banana	plastid	50.52	54.44
Bra040287.1-P	Field mustard	plastid	50.0	53.89
Solyc01g096480.2.1	Tomato	plastid	48.45	53.71
PGSC0003DMT400013827	Potato	plastid	47.94	53.14
CDY05289	Canola	mitochondrion, plastid	49.48	52.46
AT3G06730.1	Thale cress	plastid	49.48	52.46
HORVU4Hr1G012560.15	Barley	cytosol, plastid	60.31	52.23
VIT_13s0084g00790.t01	Wine grape	plastid	49.48	52.17
KRH62827	Soybean	nucleus	46.91	47.4
KRH30074	Soybean	nucleus	46.39	46.39
Bra029601.1-P	Field mustard	plastid	32.99	45.07

Protein Annotations

MapMan:10.5.9	MapMan:15.6.1.2.2.10	Gene3D:3.40.30.10	EntrezGene:8073504	UniProt:C5YKJ9	EnsemblPlants:EES14934
ProteinID:EES14934	ProteinID:EES14934.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009295	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009657
GO:GO:0009987	GO:GO:0015035	GO:GO:0016043	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	PFAM:PF00085
PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF276	EnsemblPlantsGene:SORBI_3007G116100
SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0001A879B3
RefSeq:XP_002445439.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:50284624..50290690

Molecular Weight (calculated)

21373.7 Da

IEP (calculated)

5.341

GRAVY (calculated)

-0.090

Length

194 amino acids

Sequence
(BLAST)

001: MAAAAAFPSA CAAGSLPRAP SLTPVRLLLP VPLSPARWDR SRGCSSRLVG VGASSIRRAP TLRRNASAET VVPYVPGSGK YIAPDYLVRK VSAEEVQELV
101: RGHRKVPLIV DFYATWCGPC VQMAQDIEML AVEYEDNALF VKVDTDDEYE FAKDMQVRGL PTLYFFSPDQ NKDAIRTEGL IPTDMIRNII DNEL

Best Arabidopsis Sequence Match ( AT3G06730.1 )
(BLAST)

001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM

Arabidopsis Description

CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.