CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH65986
KRH70953
KRH75089
KRH75791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06730.1	KRH70953	AT1G69200.1	20511297
AT3G06730.1	KRH75089	AT1G69200.1	20511297
AT3G06730.1	KRH65986	AT3G54090.1	20511297
AT3G06730.1	KRH75791	AT3G54090.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30074	Soybean	nucleus	90.1	89.18
CDY24669	Canola	mitochondrion, plastid	57.81	66.47
CDY34934	Canola	plastid	59.9	65.71
CDY05289	Canola	mitochondrion, plastid	61.46	64.48
Bra040287.1-P	Field mustard	plastid	60.42	64.44
VIT_13s0084g00790.t01	Wine grape	plastid	61.46	64.13
AT3G06730.1	Thale cress	plastid	60.94	63.93
Solyc01g096480.2.1	Tomato	plastid	57.81	63.43
PGSC0003DMT400013827	Potato	plastid	57.29	62.86
Bra029601.1-P	Field mustard	plastid	42.19	57.04
GSMUA_Achr8P27150_001	Banana	plastid	52.6	56.11
TraesCS4B01G074900.1	Wheat	plastid	50.0	52.17
TraesCS4D01G073500.1	Wheat	plastid	47.92	49.73
Zm00001d032337_P001	Maize	plastid	48.44	48.69
Os08t0378900-02	Rice	plastid	47.4	48.15
TraesCS4A01G240000.1	Wheat	plastid	48.44	46.97
EES14934	Sorghum	plastid	47.4	46.91
HORVU4Hr1G012560.15	Barley	cytosol, plastid	46.35	39.73

Protein Annotations

MapMan:10.5.9	EntrezGene:100784029	MapMan:15.6.1.2.2.10	Gene3D:3.40.30.10	EMBL:ACUP02002369	EnsemblPlantsGene:GLYMA_04G135300
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134
GO:GO:0055114	GO:GO:0098869	UniProt:I1JW39	InterPro:IPR013766	EnsemblPlants:KRH62827	ProteinID:KRH62827
ProteinID:KRH62827.1	PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF276	SUPFAM:SSF52833
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002339F03	:	:

Description

hypothetical protein

Coordinates

chr4:-:19936147..19943615

Molecular Weight (calculated)

21931.7 Da

IEP (calculated)

7.163

GRAVY (calculated)

-0.277

Length

192 amino acids

Sequence
(BLAST)

001: MSLFLHCHAP HHSMATLSPF STFNSKPLCA SLPNPSFLTH QQQQQHPYPL TTTTTSDHKP LSVSTLPRKL LCKPPKGKYV REDYLVKKLS AQEIQELVKG
101: ERKVPLIIDF YATWCGPCIL MAQELETLAV EYQNKALIVK VDTDDEYEFA RDMQVRGLPT VFFISPDLNK EAIRTEGLLP IQMMRDIIDK DM

Best Arabidopsis Sequence Match ( AT3G06730.1 )
(BLAST)

001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM

Arabidopsis Description

CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.