CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65986	Soybean	nucleus	86.51	91.82
CDX78206	Canola	cytosol	64.67	79.89
Bra007044.1-P	Field mustard	cytosol	64.45	79.63
PGSC0003DMT400052461	Potato	cytosol	64.24	77.32
CDX73510	Canola	plastid	69.38	69.98
AT3G54090.1	Thale cress	plastid	67.24	66.67
Solyc09g011850.2.1	Tomato	nucleus	67.02	65.48
GSMUA_Achr10P...	Banana	plastid	67.02	59.28
Os01t0851000-01	Rice	plastid	62.1	54.61
Zm00001d042847_P001	Maize	plastid	60.39	54.13
OQU87871	Sorghum	plastid	60.6	54.01
TraesCS3A01G365700.1	Wheat	plastid	59.96	53.64
TraesCS3B01G397500.1	Wheat	plastid	59.53	53.05
TraesCS3D01G358800.1	Wheat	plastid	59.53	52.85
VIT_08s0007g01640.t01	Wine grape	cytosol	63.6	41.25
KRH23212	Soybean	endoplasmic reticulum	26.77	37.76
KRH10125	Soybean	endoplasmic reticulum, nucleus	26.12	36.97
KRH29617	Soybean	endoplasmic reticulum	25.91	36.56
KRG92467	Soybean	cytosol, nucleus	25.48	36.39
KRH34333	Soybean	cytosol, nucleus	25.27	36.09
KRH17371	Soybean	cytosol	19.7	35.11
KRH35400	Soybean	cytosol, nucleus	25.48	34.9
KRH24618	Soybean	cytosol, peroxisome, plastid	25.91	34.87
KRH09171	Soybean	cytosol	25.48	34.1
KRG91421	Soybean	cytosol	24.84	34.02
KRH73007	Soybean	plastid	27.84	33.94
KRH38640	Soybean	cytosol, golgi, plastid	24.84	32.49
KRH75089	Soybean	nucleus	39.19	31.94
KRH70953	Soybean	nucleus	38.12	31.06
KRH40559	Soybean	plastid	23.13	29.92
KRH00623	Soybean	plastid	20.34	29.78

Protein Annotations

EntrezGene:100819388	MapMan:15.6.1.2.2.6	Gene3D:3.40.1190.20	EMBL:ACUP02000490	InterPro:Carboh/pur_kinase_PfkB_CS	ncoils:Coil
EnsemblPlantsGene:GLYMA_01G109700	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740	GO:GO:0016773	UniProt:I1J756
InterPro:IPR029056	EnsemblPlants:KRH75791	ProteinID:KRH75791	ProteinID:KRH75791.1	PFAM:PF00294	ScanProsite:PS00583
PANTHER:PTHR43085	PANTHER:PTHR43085:SF10	InterPro:PfkB_dom	InterPro:Ribokinase-like	SUPFAM:SSF53613	UniParc:UPI00023373E8
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:37333737..37338375

Molecular Weight (calculated)

53714.7 Da

IEP (calculated)

6.336

GRAVY (calculated)

-0.578

Length

467 amino acids

Sequence
(BLAST)

001: MASLHHHHLL LPPFPHLQSK TFHSPPPPKS PSFHRKIALR ASTVESPTPK RRGRKKKPET QTPPSNDTPP PQDADPKKEE DEVYDYDDGV DFPYSDPPLI
101: CCFGAARREF IPAVRVQDYP MHPDIYSEWK MLQWKPPEFA RAPGGPPSNV AVAHTRLGGR AAFLGKVGDD DFGEEMVLMM NEERVQTRGV RIDPGRRTGC
201: AYMKVRFEEG RMKMETVREA AEDSLLATEL NLAVLKEARI FHFNSEILTC PSMESTLFRA IKWTKKFGGL VFFDLNLPLP LWRSRDETRE IIKKAWNEAD
301: IIEVSRSELE FLLDEEYYER NRNYRPQYFA ESYEQTKNRQ EYYHYTAEEV SPLWHDRLKF LFVTDGTLRI HYYTPSFDGS VVGTEDVLIT PYTCDRTGSG
401: DAVVAAILRK LTTCPEMFEN QDVLERQLRF AVAAGIISQW TIGAVRGFPT ESATQNLKEQ VYVPSLW

Best Arabidopsis Sequence Match ( AT3G54090.1 )
(BLAST)

001: MASLLIFPHL HHFDSSLDRR EVLVVRHSQA SRRFLTPKAS INGSGITNGA AAETTSKPSR KGRKKKQTST VIEKDNTETD PELNPELADY DDGIEFPYDD
101: PPLVCCFGAV QKEFVPVVRV HDNPMHPDMY SQWKMLQWDP PEFGRAPGGP PSNVAISHVR LGGRAAFMGK VGEDDFGDEL VLMMNQERVQ TRAVKFDENS
201: KTACTRVKIK FKDGKMMAET VKEPPEDSLF ASELNLAVLK EARIFHFNSE VLTSPTMQST LFTAIQWSKK FGGLIFFDLN LPLPLWRSRN ETRKLIKKAW
301: NEANIIEVSQ QELEFLLDED YYERRRNYTP QYFAEDFDQT KNRRDYYHYT PEEIKSLWHD KLKLLVVTDG TLRLHYYTPT FDGVVIGTED VLITPFTCDR
401: TGSGDAVVAG IMRKLTTCPE MFEDQDVMER QLRFAVAAGI IAQWTIGAVR GFPTESATQN LKEQVYVPSM W

Arabidopsis Description

FLN1Fructokinase-like 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M394]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.