Factsheet for Solyc05g055160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44110.1	Solyc03g113720.2.1	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060145	Potato	cytosol	98.81	98.81
Solyc11g006460.1.1	Tomato	nucleus	92.36	92.36
VIT_06s0080g01230.t01	Wine grape	cytosol	90.93	91.37
Solyc04g009770.2.1	Tomato	nucleus	90.69	90.91
VIT_13s0073g00560.t01	Wine grape	cytosol	90.21	90.87
KRH25334	Soybean	nucleus	88.78	89.21
KRH22611	Soybean	nucleus	88.54	88.97
KRG88903	Soybean	nucleus	88.31	88.73
KRH26709	Soybean	nucleus	87.83	88.25
CDX92386	Canola	nucleus	84.25	83.65
Bra002385.1-P	Field mustard	nucleus	84.25	83.65
AT3G44110.1	Thale cress	nucleus	83.77	83.57
CDX92385	Canola	nucleus	84.01	83.41
Bra002386.1-P	Field mustard	nucleus	83.77	83.18
CDY65546	Canola	nucleus	83.29	82.9
CDY09117	Canola	nucleus	83.29	82.51
Bra020169.1-P	Field mustard	nucleus	83.05	82.27
AT5G22060.1	Thale cress	cytosol	82.1	82.1
Solyc11g071830.1.1	Tomato	plastid	81.62	81.82
Bra006608.1-P	Field mustard	nucleus	76.37	78.43
CDX88812	Canola	nucleus	76.37	78.43
CDX70980	Canola	nucleus	74.46	76.66
CDY16617	Canola	nucleus	36.99	74.52
Solyc01g090550.2.1	Tomato	nucleus	73.75	72.88
Solyc05g050820.2.1	Tomato	cytosol	34.84	61.34
Solyc05g050810.2.1	Tomato	nucleus	33.17	54.09
Solyc01g079610.2.1	Tomato	nucleus	31.5	38.26
Solyc05g006820.2.1	Tomato	plastid	28.16	37.94
Solyc04g005820.2.1	Tomato	cytosol, nucleus	28.4	37.19
Solyc02g077670.2.1	Tomato	cytosol	29.83	36.44
Solyc06g071110.2.1	Tomato	nucleus	28.64	35.61
Solyc09g005350.2.1	Tomato	nucleus, plastid	28.88	35.59
Solyc07g053620.2.1	Tomato	nucleus	18.62	34.82
Solyc01g105340.2.1	Tomato	plastid	25.06	29.75
Solyc10g084300.1.1	Tomato	nucleus	16.47	26.14
Solyc11g044450.1.1	Tomato	nucleus	21.24	25.87
Solyc03g007650.1.1	Tomato	cytosol, mitochondrion, nucleus	16.23	24.91
Solyc01g086740.2.1	Tomato	mitochondrion	25.78	24.38
Solyc03g116790.2.1	Tomato	plastid	27.68	23.29
Solyc03g118500.2.1	Tomato	plastid	27.92	21.99
Solyc01g081330.2.1	Tomato	plastid	21.72	20.97
Solyc06g060240.1.1	Tomato	cytosol	15.27	16.67

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	ncoils:Coil	InterPro:DnaJ
InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408
GO:GO:0009628	GO:GO:0009987	GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd
InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
UniProt:K4C2J3	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625
ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43888	PANTHER:PTHR43888:SF4	SMART:SM00271
SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	EnsemblPlantsGene:Solyc05g055160.2	EnsemblPlants:Solyc05g055160.2.1	UniParc:UPI0002766EAE
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:64922771..64927161

Molecular Weight (calculated)

46730.6 Da

IEP (calculated)

6.361

GRAVY (calculated)

-0.791

Length

419 amino acids

Sequence
(BLAST)

001: MFGRAPKKSD NTKYYEILGV PKTAAQEDLK KAYRKAAIKN HPDKGGDPEK FKELAQAYEV LSDPEKREIY DQYGEDALKE GMGGGGGGHD PFDIFSSFFG
101: GSPFGGGGGS SRGRRQRRGE DVVHPLKVSL EDLYNGTSKK LSLSRNVLCP KCKGKGSKSG ASMKCSGCQG SGMKVTIRQL GPSMIQQMQH PCNECKGTGE
201: MINDKDRCGQ CKGEKVVQEK KVLEVVVEKG MQNGQKITFP GEADEAPDTV TGDIVFVLQQ KEHPKFKRKG DDLFVEHTLS LTEALCGFQF ILTHLDTRQL
301: IIKSQPGEVV KPDQFKAIND EGMPMYQRPF MRGKLYIHFT VEFPDTLSLE QCKNLEAVLP PKPKTQMTDM ELDECEETTL HDVNIEEEMR RKQQQAQEAY
401: DEDDEDMHGG AQRVQCAQQ

Best Arabidopsis Sequence Match ( AT5G22060.1 )
(BLAST)

001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ

Arabidopsis Description

ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.