Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g007650.1.1 | Tomato | cytosol, mitochondrion, nucleus | 96.59 | 93.41 |
| AT2G20550.2 | Thale cress | cytosol | 53.03 | 49.3 |
| VIT_10s0003g00260.t01 | Wine grape | cytosol | 56.82 | 43.86 |
| Solyc09g005350.2.1 | Tomato | nucleus, plastid | 52.65 | 40.88 |
| Solyc02g077670.2.1 | Tomato | cytosol | 53.03 | 40.82 |
| Solyc06g071110.2.1 | Tomato | nucleus | 49.62 | 38.87 |
| Bra010365.1-P | Field mustard | mitochondrion | 55.3 | 37.63 |
| Solyc05g006820.2.1 | Tomato | plastid | 44.32 | 37.62 |
| Solyc04g005820.2.1 | Tomato | cytosol, nucleus | 43.94 | 36.25 |
| Solyc07g053620.2.1 | Tomato | nucleus | 21.97 | 25.89 |
| Solyc11g044450.1.1 | Tomato | nucleus | 30.3 | 23.26 |
| Solyc06g060240.1.1 | Tomato | cytosol | 31.82 | 21.88 |
| Solyc01g079610.2.1 | Tomato | nucleus | 27.65 | 21.16 |
| Solyc05g050820.2.1 | Tomato | cytosol | 17.8 | 19.75 |
| Solyc11g071830.1.1 | Tomato | plastid | 27.27 | 17.22 |
| Solyc04g009770.2.1 | Tomato | nucleus | 27.27 | 17.22 |
| Solyc01g090550.2.1 | Tomato | nucleus | 27.65 | 17.22 |
| Solyc11g006460.1.1 | Tomato | nucleus | 26.89 | 16.95 |
| Solyc05g055160.2.1 | Tomato | nucleus | 26.14 | 16.47 |
| Solyc01g105340.2.1 | Tomato | plastid | 18.94 | 14.16 |
| Solyc03g116790.2.1 | Tomato | plastid | 21.21 | 11.24 |
| Solyc01g081330.2.1 | Tomato | plastid | 16.67 | 10.14 |
| Solyc01g086740.2.1 | Tomato | mitochondrion | 16.29 | 9.71 |
| Solyc05g050810.2.1 | Tomato | nucleus | 9.09 | 9.34 |
| Solyc03g118500.2.1 | Tomato | plastid | 17.42 | 8.65 |
Protein Annotations
| EnsemblPlants:Solyc10g084300.1.1 | EnsemblPlantsGene:Solyc10g084300.1 | Gene3D:2.20.25.170 | Gene3D:2.60.260.20 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051082 | InterPro:DnaJ_C |
| InterPro:HSP40/DnaJ_pept-bd | PANTHER:PTHR24078 | PANTHER:PTHR24078:SF298 | PFAM:PF01556 | SUPFAM:SSF49493 | UniParc:UPI000276A264 |
| UniProt:K4D3L6 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:63910047..63910841
Molecular Weight (calculated)
29306.8 Da
IEP (calculated)
10.258
GRAVY (calculated)
-0.411
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MNESSTSLRI TRGSPLHVNV VDILPSFSMG LTQDFGVNVG SLGKSKQLIQ EQTMEELRSK KKNDPMTVQQ VNHGVPMHSS VLRKEAPVQQ NLPCNLEDLY
101: KGTTKKMKIS REIADSSGKR IVQEILTIEI KPGWKKGTKI TFQEKGNEQP GVIPADLVFI IDEKPHKVFS RDGNDLIVTQ KIPLAEALTG TTVQLTTLDG
201: RNLTIPINNV IQPNYEHIVP GEGMPLPKDP SKKGNLRIKF DIKFPARLTV AQKSGIKELL GIMR
101: KGTTKKMKIS REIADSSGKR IVQEILTIEI KPGWKKGTKI TFQEKGNEQP GVIPADLVFI IDEKPHKVFS RDGNDLIVTQ KIPLAEALTG TTVQLTTLDG
201: RNLTIPINNV IQPNYEHIVP GEGMPLPKDP SKKGNLRIKF DIKFPARLTV AQKSGIKELL GIMR
001: MSHPRNADDI FSEFFGVSRP SGPSGPRNAD DIYSEFFGVS SPSGPRNKDD IFSEFFEVSN PSGPRDKDDI SAEYFGVPSP SGSGSSGGRE GGGGGGGTMH
101: HGGARKAAPV EKKLPCSLED LYKGTTKKMK ISREIAGVFG KTTQVQEILT VDVKPGWKTG TKITFSEKGN EQPGVIPADL VFIIDEKPHP VFTREGNDLV
201: VTQKISVLEA FTGYTVNLTT LDGRRLTIPV NTVIHPEYVE VVPNEGMPLQ KDQAKKGNLR IKFNIKFPTT LTSEQKTGLK KLLG
101: HGGARKAAPV EKKLPCSLED LYKGTTKKMK ISREIAGVFG KTTQVQEILT VDVKPGWKTG TKITFSEKGN EQPGVIPADL VFIIDEKPHP VFTREGNDLV
201: VTQKISVLEA FTGYTVNLTT LDGRRLTIPV NTVIHPEYVE VVPNEGMPLQ KDQAKKGNLR IKFNIKFPTT LTSEQKTGLK KLLG
Arabidopsis Description
At2g20550 [Source:UniProtKB/TrEMBL;Acc:Q9SIL4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.