Factsheet for Solyc11g071830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44110.1	Solyc03g113720.2.1	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007728	Potato	nucleus	95.93	95.7
VIT_06s0080g01230.t01	Wine grape	cytosol	83.01	83.21
VIT_13s0073g00560.t01	Wine grape	cytosol	82.06	82.45
KRH22611	Soybean	nucleus	81.82	82.01
KRH25334	Soybean	nucleus	81.58	81.77
Solyc05g055160.2.1	Tomato	nucleus	81.82	81.62
KRH26709	Soybean	nucleus	81.34	81.53
KRG88903	Soybean	nucleus	81.1	81.3
Solyc11g006460.1.1	Tomato	nucleus	81.1	80.91
Solyc04g009770.2.1	Tomato	nucleus	79.19	79.19
AT3G44110.1	Thale cress	nucleus	78.71	78.33
CDY65546	Canola	nucleus	77.75	77.2
CDX92386	Canola	nucleus	77.75	77.01
CDX92385	Canola	nucleus	77.75	77.01
Bra002385.1-P	Field mustard	nucleus	77.75	77.01
Bra002386.1-P	Field mustard	nucleus	77.51	76.78
CDY09117	Canola	nucleus	77.27	76.36
Bra020169.1-P	Field mustard	nucleus	76.79	75.89
AT5G22060.1	Thale cress	cytosol	75.6	75.42
Bra006608.1-P	Field mustard	nucleus	72.49	74.26
CDX88812	Canola	nucleus	72.49	74.26
CDX70980	Canola	nucleus	71.77	73.71
CDY16617	Canola	nucleus	34.93	70.19
Solyc01g090550.2.1	Tomato	nucleus	68.9	67.92
Solyc05g050820.2.1	Tomato	cytosol	34.45	60.5
Solyc05g050810.2.1	Tomato	nucleus	29.67	48.25
Solyc01g079610.2.1	Tomato	nucleus	31.34	37.97
Solyc05g006820.2.1	Tomato	plastid	27.75	37.3
Solyc04g005820.2.1	Tomato	cytosol, nucleus	28.23	36.88
Solyc07g053620.2.1	Tomato	nucleus	19.14	35.71
Solyc09g005350.2.1	Tomato	nucleus, plastid	28.95	35.59
Solyc02g077670.2.1	Tomato	cytosol	29.19	35.57
Solyc06g071110.2.1	Tomato	nucleus	27.27	33.83
Solyc01g105340.2.1	Tomato	plastid	24.64	29.18
Solyc10g084300.1.1	Tomato	nucleus	17.22	27.27
Solyc03g007650.1.1	Tomato	cytosol, mitochondrion, nucleus	16.99	26.01
Solyc01g086740.2.1	Tomato	mitochondrion	26.79	25.28
Solyc11g044450.1.1	Tomato	nucleus	20.1	24.42
Solyc03g116790.2.1	Tomato	plastid	26.79	22.49
Solyc01g081330.2.1	Tomato	plastid	22.97	22.12
Solyc03g118500.2.1	Tomato	plastid	27.99	21.99
Solyc06g060240.1.1	Tomato	cytosol	14.59	15.89

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	ncoils:Coil	InterPro:DnaJ
InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408
GO:GO:0009628	GO:GO:0009987	GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd
InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
UniProt:K4DAP0	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625
ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43888	PANTHER:PTHR43888:SF4	SMART:SM00271
SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	EnsemblPlantsGene:Solyc11g071830.1	EnsemblPlants:Solyc11g071830.1.1	UniParc:UPI0002769985
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:55181780..55184787

Molecular Weight (calculated)

46522.3 Da

IEP (calculated)

6.433

GRAVY (calculated)

-0.783

Length

418 amino acids

Sequence
(BLAST)

001: MFGRGGKKKS DNTKFYEILG VSKNASEDEI KKAYRKAAMK NHPDKGGDPE KFKELAQAYE VLSDSQKREI YDQYGEEALK EGMGGGGGTH DPFDLFNSFF
101: SGSPFGGGGR RGQRERRGDD VVHPLKVSLE DLYNGMTKKL SLSRNVICSK CSGKGSKSGE SMKCSGCEGT GMKVSIRQLG PGMIQQMQQP CNKCKGTGET
201: IDDKDRCPQC KGKKVVPEKK VIEVHVEKGM QNGQKITFPG EADEAPDTVT GDVVFVLQQK DHPKFKRKGD DLFVDHTLTL TEALCGFQFI LAHLDGRRLL
301: VKSNPGEVVK PDQFKAINDE GMPVYQRPFM KGKLYIHFIV EFPDSLSLPQ VQLLEAMLPS RPTSQYSDME LDECEETTLH DVNMEEEMRR KQAAQQEAYD
401: EDEEMSGGGG QRVQCAQQ

Best Arabidopsis Sequence Match ( AT3G44110.1 )
(BLAST)

001: MFGRGPSKKS DNTKFYEILG VPKSASPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GGGPFGGNTS RQRRQRRGED VVHPLKVSLE DVYLGTMKKL SLSRNALCSK CNGKGSKSGA SLKCGGCQGS GMKVSIRQLG PGMIQQMQHA CNECKGTGET
201: INDRDRCPQC KGDKVIPEKK VLEVNVEKGM QHSQKITFEG QADEAPDTVT GDIVFVLQQK EHPKFKRKGE DLFVEHTLSL TEALCGFQFV LTHLDGRSLL
301: IKSNPGEVVK PDSYKAISDE GMPIYQRPFM KGKLYIHFTV EFPDSLSPDQ TKALEAVLPK PSTAQLSDME IDECEETTLH DVNIEDEMRR KAQAQREAYD
401: DDDEDDDHPG GAQRVQCAQQ

Arabidopsis Description

ATJ3DnaJ protein homolog atj3 [Source:UniProtKB/TrEMBL;Acc:Q0WW92]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.