Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G20560.1 | Thale cress | cytosol | 66.55 | 56.08 |
| Solyc10g084300.1.1 | Tomato | nucleus | 49.3 | 53.03 |
| Solyc03g007650.1.1 | Tomato | cytosol, mitochondrion, nucleus | 48.94 | 50.92 |
| AT4G28480.1 | Thale cress | cytoskeleton, cytosol, nucleus | 61.62 | 50.29 |
| VIT_10s0003g00260.t01 | Wine grape | cytosol | 57.04 | 47.37 |
| Bra010365.1-P | Field mustard | mitochondrion | 61.97 | 45.36 |
| AT3G08910.1 | Thale cress | nucleus | 48.94 | 43.03 |
| AT5G01390.1 | Thale cress | cytosol | 50.35 | 42.69 |
| AT1G59725.1 | Thale cress | cytoskeleton, cytosol, nucleus | 44.37 | 38.07 |
| AT1G10350.1 | Thale cress | cytosol | 44.01 | 35.82 |
| AT5G25530.1 | Thale cress | cytosol | 42.96 | 35.16 |
| AT3G47940.1 | Thale cress | cytosol | 42.96 | 34.86 |
| AT1G44160.1 | Thale cress | mitochondrion | 29.93 | 23.81 |
| AT3G62600.1 | Thale cress | endoplasmic reticulum, golgi | 24.65 | 20.23 |
| AT5G22060.1 | Thale cress | cytosol | 28.87 | 19.57 |
| AT3G44110.1 | Thale cress | nucleus | 28.17 | 19.05 |
| AT1G11040.1 | Thale cress | cytosol, nucleus, plastid | 28.87 | 18.72 |
| AT4G39960.1 | Thale cress | mitochondrion, plastid | 19.72 | 12.53 |
| AT2G22360.1 | Thale cress | plastid | 18.66 | 11.99 |
| AT5G48030.1 | Thale cress | mitochondrion | 19.01 | 11.84 |
| AT1G80030.2 | Thale cress | plastid | 20.07 | 11.4 |
| AT1G28210.2 | Thale cress | mitochondrion | 16.9 | 11.24 |
| AT3G17830.1 | Thale cress | plastid | 16.55 | 9.09 |
Protein Annotations
| Gene3D:2.60.260.20 | MapMan:35.1 | EntrezGene:816577 | ProteinID:AAD25655.1 | ProteinID:AEC07026.1 | ProteinID:AEC07027.1 |
| EMBL:AK228773 | ArrayExpress:AT2G20550 | EnsemblPlantsGene:AT2G20550 | RefSeq:AT2G20550 | TAIR:AT2G20550 | RefSeq:AT2G20550-TAIR-G |
| EnsemblPlants:AT2G20550.2 | TAIR:AT2G20550.2 | Unigene:At.39676 | EMBL:BT022071 | EMBL:BT023480 | InterPro:DnaJ_C |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0051082 | InterPro:HSP40/DnaJ_pept-bd | RefSeq:NP_001031380.1 | RefSeq:NP_179645.1 | PFAM:PF01556 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PANTHER:PTHR24078 | PANTHER:PTHR24078:SF298 | UniProt:Q9SIL4 | SUPFAM:SSF49493 | UniParc:UPI00000AA8BD |
| SEG:seg | : | : | : | : | : |
Description
At2g20550 [Source:UniProtKB/TrEMBL;Acc:Q9SIL4]
Coordinates
chr2:-:8845802..8847311
Molecular Weight (calculated)
30703.4 Da
IEP (calculated)
8.423
GRAVY (calculated)
-0.509
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHPRNADDI FSEFFGVSRP SGPSGPRNAD DIYSEFFGVS SPSGPRNKDD IFSEFFEVSN PSGPRDKDDI SAEYFGVPSP SGSGSSGGRE GGGGGGGTMH
101: HGGARKAAPV EKKLPCSLED LYKGTTKKMK ISREIAGVFG KTTQVQEILT VDVKPGWKTG TKITFSEKGN EQPGVIPADL VFIIDEKPHP VFTREGNDLV
201: VTQKISVLEA FTGYTVNLTT LDGRRLTIPV NTVIHPEYVE VVPNEGMPLQ KDQAKKGNLR IKFNIKFPTT LTSEQKTGLK KLLG
101: HGGARKAAPV EKKLPCSLED LYKGTTKKMK ISREIAGVFG KTTQVQEILT VDVKPGWKTG TKITFSEKGN EQPGVIPADL VFIIDEKPHP VFTREGNDLV
201: VTQKISVLEA FTGYTVNLTT LDGRRLTIPV NTVIHPEYVE VVPNEGMPLQ KDQAKKGNLR IKFNIKFPTT LTSEQKTGLK KLLG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.