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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
EpiLoc:plastid
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
extracellular: 26583031
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26583031 doi
F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400064554 Potato extracellular 97.13 97.13
Solyc04g071900.2.1 Tomato extracellular 65.8 65.24
VIT_18s0072g00160.t01 Wine grape cytosol, mitochondrion, plastid 60.34 63.25
Bra016127.1-P Field mustard extracellular, golgi 60.34 58.01
CDX96335 Canola extracellular, golgi 60.34 58.01
CDX72818 Canola extracellular, golgi, vacuole 59.77 57.46
AT1G71695.1 Thale cress extracellular, golgi, vacuole 58.05 56.42
Bra003918.1-P Field mustard extracellular, golgi 58.62 56.35
CDX68305 Canola extracellular, golgi 58.62 56.35
CDY53824 Canola extracellular, golgi 58.05 55.8
GSMUA_Achr3P02950_001 Banana extracellular 51.44 54.41
GSMUA_Achr10P... Banana extracellular 44.54 54.01
GSMUA_AchrUn_... Banana extracellular 22.7 52.32
Os01t0963000-01 Rice extracellular 52.3 51.12
TraesCS3A01G509600.1 Wheat extracellular 52.59 51.12
HORVU3Hr1G112040.1 Barley extracellular 52.59 50.97
TraesCS3B01G578600.1 Wheat extracellular 52.01 50.7
TraesCS3D01G517800.1 Wheat extracellular 51.72 50.14
TraesCS7D01G066400.1 Wheat golgi 51.15 49.72
TraesCS3D01G518200.1 Wheat extracellular 51.15 49.72
TraesCS3D01G517000.1 Wheat extracellular 51.15 49.17
EES02106 Sorghum extracellular, plastid 51.15 49.17
HORVU7Hr1G013470.1 Barley extracellular 50.57 49.03
TraesCSU01G103400.1 Wheat golgi 50.0 49.01
TraesCSU01G103300.1 Wheat extracellular 49.71 48.73
EES02102 Sorghum extracellular 52.59 48.54
TraesCS3B01G578000.1 Wheat extracellular 51.44 48.51
Zm00001d042022_P001 Maize extracellular 50.29 48.48
TraesCS7A01G070900.1 Wheat extracellular 49.71 47.79
TraesCS4A01G419300.1 Wheat golgi 49.43 47.78
TraesCS3A01G510600.1 Wheat extracellular, vacuole 50.29 47.68
KRH08650 Soybean endoplasmic reticulum 46.84 47.25
Os01t0962700-01 Rice extracellular 50.57 46.68
HORVU3Hr1G112350.1 Barley extracellular 50.57 46.32
Zm00001d042019_P002 Maize extracellular 47.13 46.2
TraesCS3B01G577900.1 Wheat extracellular 50.0 45.55
KRH70265 Soybean cytosol 22.99 45.45
TraesCS3A01G510900.1 Wheat cytosol 52.59 45.41
TraesCS3D01G516900.1 Wheat extracellular 47.13 44.93
KRH08651 Soybean extracellular 43.68 43.93
HORVU3Hr1G112000.1 Barley extracellular 45.69 43.09
KRH35106 Soybean extracellular 43.39 42.9
TraesCS3A01G509100.1 Wheat extracellular 46.84 42.34
TraesCS3A01G510300.1 Wheat extracellular 43.39 40.05
KRH08653 Soybean endoplasmic reticulum 39.37 39.71
GSMUA_Achr2P20510_001 Banana unclear 54.6 27.98
HORVU3Hr1G111970.1 Barley cytosol, extracellular, plastid 15.8 24.66
Protein Annotations
KEGG:00940+1.11.1.7Gene3D:1.10.420.10Gene3D:1.10.520.10MapMan:35.1GO:GO:0003674GO:GO:0003824
GO:GO:0004601GO:GO:0005488GO:GO:0005575GO:GO:0005576GO:GO:0005618GO:GO:0005623
GO:GO:0006950GO:GO:0006979GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009505
GO:GO:0009506GO:GO:0009664GO:GO:0009987GO:GO:0016043GO:GO:0016491GO:GO:0020037
GO:GO:0030312GO:GO:0042744GO:GO:0046872GO:GO:0055114GO:GO:0098869InterPro:Haem_peroxidase
InterPro:Haem_peroxidase_pln/fun/bacInterPro:IPR002016UniProt:K4BTH6PFAM:PF00141PRINTS:PR00458PRINTS:PR00461
ScanProsite:PS00435ScanProsite:PS00436PFscan:PS50873PANTHER:PTHR31235PANTHER:PTHR31235:SF157InterPro:Peroxidase_pln
InterPro:Peroxidases_ASInterPro:Peroxidases_heam-ligand_BSSUPFAM:SSF48113InterPro:Secretory_peroxidaseSignalP:SignalP-noTMEnsemblPlantsGene:Solyc04g071890.2
EnsemblPlants:Solyc04g071890.2.1UniParc:UPI0002766C00SEG:seg:::
Description
Peroxidase [Source:UniProtKB/TrEMBL;Acc:K4BTH6]
Coordinates
chr4:+:58913334..58915438
Molecular Weight (calculated)
38136.4 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.161
Length
348 amino acids
Sequence
(BLAST)
001: MVSTTLSSFL LVLVLSFFVS EAQRPALTKG LSWSFYQSSC PQLESIIRNR LQKQIKDDVG QAAGLLRLHF HDCFVQGCDG SVLLDGSAGG PSEQTAIPNL
101: TLRKRSFKII DDLRKRIQDE CGQVVSCSDI VAIAARDSVV LTGGPNYDVP LGRKDGVNFA TEQATIDNLV APSANTTTVL SLLATKGLDA TDAVALSGAH
201: TIGISHCPSF TDRLYPNQDS TMDKTFANNL KGSCPTADSN NTVNMDIRSP NVFDNKYYVD LMNRQGLFTS DQDLYTDRRT RGIVTSFAVN QSLFYEKFVI
301: GMIKMGQMNV LTGGQGEIRN RCDRRNKAKK VDIATVVEEL EETFSALF
Best Arabidopsis Sequence Match ( AT1G71695.1 )
(BLAST)
001: MTKAYSTRVL TFLILISLMA VTLNLFPTVE AKKRSRDAPI VKGLSWNFYQ KACPKVENII RKELKKVFKR DIGLAAAILR IHFHDCFVQG CEASVLLAGS
101: ASGPGEQSSI PNLTLRQQAF VVINNLRALV QKKCGQVVSC SDILALAARD SVVLSGGPDY AVPLGRRDSL AFASQETTLN NLPPPFFNAS QLIADFANRN
201: LNITDLVALS GGHTIGIAHC PSFTDRLYPN QDPTMNQFFA NSLKRTCPTA NSSNTQVNDI RSPDVFDNKY YVDLMNRQGL FTSDQDLFVD KRTRGIVESF
301: AIDQQLFFDY FTVAMIKMGQ MSVLTGTQGE IRSNCSARNT QSFMSVLEEG IEEAISMI
Arabidopsis Description
PER12Peroxidase [Source:UniProtKB/TrEMBL;Acc:A0A178WB34]
SUBAcon: [golgi,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.