Factsheet for Solyc03g005600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

plastid 2
mitochondrion 2
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, unclear
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034882	Potato	cytosol, endoplasmic reticulum, golgi, mitochondrion	97.42	97.58
Solyc09g090190.2.1	Tomato	nucleus	88.06	88.35
VIT_05s0049g01180.t01	Wine grape	endoplasmic reticulum, golgi	80.81	81.86
KRG92410	Soybean	endoplasmic reticulum, golgi	80.48	80.48
KRH34393	Soybean	endoplasmic reticulum	80.48	80.35
AT4G14360.2	Thale cress	endoplasmic reticulum, golgi	78.23	79.77
KRH69085	Soybean	endoplasmic reticulum, golgi	79.35	78.72
KRH31698	Soybean	endoplasmic reticulum	79.03	78.4
CDY68608	Canola	endoplasmic reticulum, golgi, vacuole	76.94	77.81
CDX94861	Canola	endoplasmic reticulum, golgi	75.48	77.61
Bra014936.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	76.61	77.49
CDX85084	Canola	endoplasmic reticulum, golgi, vacuole	76.29	77.41
AT3G23300.1	Thale cress	endoplasmic reticulum, golgi, vacuole	75.97	77.09
CDX92981	Canola	endoplasmic reticulum, golgi	75.32	77.06
Bra001909.1-P	Field mustard	endoplasmic reticulum, golgi	75.32	77.06
GSMUA_Achr1P20520_001	Banana	endoplasmic reticulum, golgi, vacuole	76.61	76.49
GSMUA_Achr6P36560_001	Banana	endoplasmic reticulum, golgi, vacuole	76.45	76.45
GSMUA_Achr5P21350_001	Banana	endoplasmic reticulum	74.68	74.56
Zm00001d032703_P006	Maize	endoplasmic reticulum, golgi, vacuole	71.29	72.58
Os10t0477100-01	Rice	golgi	72.1	72.45
OQU91634	Sorghum	endoplasmic reticulum, golgi	71.61	72.08
TraesCS1D01G153300.1	Wheat	endoplasmic reticulum, golgi	71.61	72.08
TraesCS1B01G170600.2	Wheat	endoplasmic reticulum, golgi	71.61	72.08
TraesCS1A01G154400.2	Wheat	golgi	70.16	69.16
Zm00001d014036_P002	Maize	endoplasmic reticulum	70.97	67.28
Solyc02g067890.2.1	Tomato	nucleus	58.39	59.34
Solyc10g079450.1.1	Tomato	plasma membrane	42.42	43.04
Solyc01g010870.2.1	Tomato	nucleus, unclear	37.74	38.55
Solyc06g069870.2.1	Tomato	endoplasmic reticulum	37.9	38.21
Solyc03g116150.2.1	Tomato	nucleus	35.65	37.84
Solyc08g013740.2.1	Tomato	unclear	38.23	37.56
Solyc06g035790.2.1	Tomato	plastid	39.35	37.48
Solyc05g052970.2.1	Tomato	endoplasmic reticulum	40.97	37.46
Solyc01g009600.2.1	Tomato	plastid	38.23	37.38
Solyc05g007490.2.1	Tomato	nucleus, plastid, unclear	36.61	37.09
Solyc01g091690.2.1	Tomato	plastid	37.9	36.95
Solyc08g075870.2.1	Tomato	nucleus, unclear	35.48	36.85
Solyc08g077240.2.1	Tomato	nucleus	36.45	36.69
Solyc08g005490.2.1	Tomato	nucleus, unclear	35.0	36.35
Solyc04g058180.2.1	Tomato	plastid	37.58	36.07
Solyc03g026120.2.1	Tomato	plastid	37.58	35.85
Solyc01g091640.2.1	Tomato	nucleus	34.35	35.56
Solyc06g051000.2.1	Tomato	plastid	35.65	34.42
Solyc04g063230.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	41.29	33.33
Solyc05g056580.2.1	Tomato	golgi	39.35	30.01
Solyc05g052500.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	35.48	28.21
Solyc02g084670.2.1	Tomato	unclear	38.55	27.07
Solyc04g080360.2.1	Tomato	nucleus	32.1	25.58

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0032259	UniProt:K4BDY4	PFAM:PF03141
PANTHER:PTHR10108	PANTHER:PTHR10108:SF704	InterPro:Put_SAM_MeTrfase	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	EnsemblPlantsGene:Solyc03g005600.2
EnsemblPlants:Solyc03g005600.2.1	TMHMM:TMhelix	UniParc:UPI000276925D	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:+:438634..441628

Molecular Weight (calculated)

70623.0 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.448

Length

620 amino acids

Sequence
(BLAST)

001: MMRGRSDGAQ KKRLWTFVGI GTVLVVFLYM YFGSKSGGES ALEYGSRSLR KLGSSYLGGD DNSDLSSRQE EKFGLEDGDG GIVPKSFPVC DDRHSELIPC
101: LDRHLIYQMR LKLDLSLMEH YERHCPLPER RYNCLIPPPP GYKVPIKWPR SRDEVWKLNI PHTHLANEKS DQNWMVVKGE KIVFPGGGTH FHYGADKYIA
201: LIANMLNFTN NNLNDEGRIR TVFDVGCGVA SFGGYLLSSD IIAMSLAPND VHQNQIQFAL ERGIPAYLGV LGTKRLPYPS RSFEFSHCSR CRIDWLQRDG
301: ILLLELDRVL RPGGYFAYSS PEAYAQDEED LRIWREMSTL VERMCWRIAA KKNQTVIWQK PLNNDCYMER PPGTQPPLCR SDNDPDAVWG VNMEACITPY
401: SEHDHKVSGS GLAPWPARLS SPPPRLADFG YSNEMFEKDT DTWRERVDHY WSLLSSKISS DTLRNIMDMK ANLGSFAASL KDKNVWVMNV VPKDGPNTLK
501: IVYDRGLIGT THDWCEAFST YPRTYDLLHA WTVFSDAEKK GCSGEDLLLE IDRILRPTGF VIIRDKQHII EFIKKHLSAL HWEAVASTDS TSDPEQDNDE
601: VVFVVQKKLW LTSGSIRDTE

Best Arabidopsis Sequence Match ( AT1G04430.2 )
(BLAST)

001: MMRGRSDGGL KKRLIASVCV VALFVCFLFM YYGSSSQGAS ALEYGRSLRK LGSSYLSGDD DNGDTKQDDS VANAEDSLVV AKSFPVCDDR HSEIIPCLDR
101: NFIYQMRLKL DLSLMEHYER HCPPPERRFN CLIPPPSGYK VPIKWPKSRD EVWKANIPHT HLAKEKSDQN WMVEKGEKIS FPGGGTHFHY GADKYIASIA
201: NMLNFSNDVL NDEGRLRTVL DVGCGVASFG AYLLASDIMT MSLAPNDVHQ NQIQFALERG IPAYLGVLGT KRLPYPSRSF EFAHCSRCRI DWLQRDGLLL
301: LELDRVLRPG GYFAYSSPEA YAQDEENLKI WKEMSALVER MCWRIAVKRN QTVVWQKPLS NDCYLEREPG TQPPLCRSDA DPDAVAGVSM EACITPYSKH
401: DHKTKGSGLA PWPARLTSSP PRLADFGYST DMFEKDTELW KQQVDSYWNL MSSKVKSNTV RNIMDMKAHM GSFAAALKDK DVWVMNVVSP DGPNTLKLIY
501: DRGLIGTNHN WCEAFSTYPR TYDLLHAWSI FSDIKSKGCS AEDLLIEMDR ILRPTGFVII RDKQSVVESI KKYLQALHWE TVASEKVNTS SELDQDSEDG
601: ENNVVFIVQK KLWLTSESLR DSE

Arabidopsis Description

Probable methyltransferase PMT8 [Source:UniProtKB/Swiss-Prot;Acc:Q940J9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.