Factsheet for Solyc01g009600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030542	Potato	plastid	95.58	95.13
Solyc03g026120.2.1	Tomato	plastid	75.55	73.69
Solyc06g035790.2.1	Tomato	plastid	72.56	70.66
HORVU2Hr1G095070.1	Barley	cytosol	47.32	69.28
VIT_16s0100g00570.t01	Wine grape	mitochondrion	67.03	64.79
KRG91450	Soybean	mitochondrion	60.25	63.67
KRH38569	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	63.56	63.67
KRH09116	Soybean	endoplasmic reticulum	63.09	63.29
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, golgi	52.84	63.09
GSMUA_Achr5P13670_001	Banana	plastid	59.15	63.03
Os04t0570800-02	Rice	golgi	62.93	61.76
Solyc01g091690.2.1	Tomato	plastid	61.83	61.64
KXG26943	Sorghum	plastid	62.3	61.62
TraesCS2B01G418400.1	Wheat	golgi	61.99	61.6
TraesCS2A01G400300.1	Wheat	mitochondrion	61.51	61.51
TraesCS2D01G397900.1	Wheat	mitochondrion	61.83	61.44
Zm00001d026079_P001	Maize	plastid	61.99	61.31
Zm00001d002625_P003	Maize	mitochondrion	61.51	61.13
Zm00001d051442_P002	Maize	plasma membrane	61.67	60.43
Os02t0675700-01	Rice	mitochondrion	61.51	60.37
EES05735	Sorghum	mitochondrion, plastid	62.93	59.91
HORVU6Hr1G065360.4	Barley	mitochondrion	60.88	59.84
TraesCS6A01G256000.1	Wheat	mitochondrion	60.41	59.75
TraesCS6D01G237200.1	Wheat	golgi	60.57	59.72
GSMUA_Achr5P03280_001	Banana	plastid	53.94	59.58
TraesCS6B01G269400.1	Wheat	mitochondrion, plastid	60.41	59.56
Solyc08g013740.2.1	Tomato	unclear	57.57	57.84
Solyc03g116150.2.1	Tomato	nucleus	49.05	53.25
Solyc06g069870.2.1	Tomato	endoplasmic reticulum	50.79	52.36
Solyc05g007490.2.1	Tomato	nucleus, plastid, unclear	50.47	52.29
Solyc08g077240.2.1	Tomato	nucleus	50.63	52.11
Solyc01g010870.2.1	Tomato	nucleus, unclear	48.9	51.07
Solyc08g005490.2.1	Tomato	nucleus, unclear	42.27	44.89
Solyc08g075870.2.1	Tomato	nucleus, unclear	41.48	44.05
Solyc01g091640.2.1	Tomato	nucleus	38.64	40.9
Solyc03g005600.2.1	Tomato	nucleus, unclear	37.38	38.23
Solyc09g090190.2.1	Tomato	nucleus	37.22	38.19
Solyc02g067890.2.1	Tomato	nucleus	36.44	37.87
Solyc10g079450.1.1	Tomato	plasma membrane	32.49	33.72
Solyc05g052970.2.1	Tomato	endoplasmic reticulum	35.33	33.04
Solyc06g051000.2.1	Tomato	plastid	32.97	32.55
Solyc04g058180.2.1	Tomato	plastid	32.65	32.04
Solyc04g063230.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	35.96	29.69
Solyc05g056580.2.1	Tomato	golgi	35.65	27.8
Solyc05g052500.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	32.33	26.28
Solyc02g084670.2.1	Tomato	unclear	34.07	24.46
Solyc04g080360.2.1	Tomato	nucleus	29.97	24.42

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757
GO:GO:0016740	GO:GO:0032259	UniProt:K4ATF5	PFAM:PF03141	PANTHER:PTHR10108	PANTHER:PTHR10108:SF1049
InterPro:Put_SAM_MeTrfase	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	EnsemblPlantsGene:Solyc01g009600.2	EnsemblPlants:Solyc01g009600.2.1	UniParc:UPI0002763731
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:3833422..3837877

Molecular Weight (calculated)

72157.1 Da

IEP (calculated)

7.883

GRAVY (calculated)

-0.455

Length

634 amino acids

Sequence
(BLAST)

001: MAGPKTPPYY SPTYKKNGAN YPSSPHSIRI NVYTLAIAFT ILCSMSYLIG RGSISTSPVS NASSSVLCIP LKITSSTSGV YKNSSSGDEE GEGAVSDDVK
101: LYPPCDFKYS EYTPCEDPQR SLKFKRDRLI YRERHCPDKT QLLKCRVPAP YGYKKPFKWP KSRDLAWYAN VPHKELTVEK AVQNWIRKEG DKFRFPGGGT
201: MFPNGADAYV DDIDKLINLK DGSIRTAIDT GCGVASWGAY LLSRDILAMS FAPRDTHEAQ VQFALERGVP ALIGVLASKR LPYPSRAFDM AHCSRCLIPW
301: DLYDGAYLME VDRVLRPGGY WILSGPPIRW RKYFKGWERT KDDLNGEQTR IEEVAKKLCW KKFVEKDDIA IWQKPYNHFQ CKEQKKQLMC SVQDYDKAWY
401: TELETCITPL PEVTSEEDVA GGQLEKWPKR LNAIPPRISS GSVKGVTAGS FEKDSQLWRK RVSYYKSIDN KLNQPGRFRN LLDMNANLGG FAASWVDDPV
501: WVMNIVPAEA EVNTLGVIYE RGLIGTYQSW CEAMSTYPRT YDLLHADSIF TMYKERCDMD DILLEMDRIL RPEGSIIIRE DVDILVEVKR IVDGLNWESL
601: IVDHEDGPME REKLLFGVKT YWTAPANTTT SPRI

Best Arabidopsis Sequence Match ( AT4G00750.1 )
(BLAST)

001: MGNYRWPSKL SKLSLRAKQT NLYRVILIAI LCVTFYFVGV WQHSGRGISR SSISNHELTS VPCTFPHQTT PILNFASRHT APDLPPTITD ARVVQIPSCG
101: VEFSEYTPCE FVNRSLNFPR ERLIYRERHC PEKHEIVRCR IPAPYGYSLP FRWPESRDVA WFANVPHTEL TVEKKNQNWV RYEKDRFLFP GGGTMFPRGA
201: DAYIDEIGRL INLKDGSIRT AIDTGCGVAS FGAYLMSRNI VTMSFAPRDT HEAQVQFALE RGVPAIIGVL ASIRLPFPAR AFDIAHCSRC LIPWGQYNGT
301: YLIEVDRVLR PGGYWILSGP PINWQRHWKG WERTRDDLNS EQSQIERVAR SLCWRKLVQR EDLAVWQKPT NHVHCKRNRI ALGRPPFCHR TLPNQGWYTK
401: LETCLTPLPE VTGSEIKEVA GGQLARWPER LNALPPRIKS GSLEGITEDE FVSNTEKWQR RVSYYKKYDQ QLAETGRYRN FLDMNAHLGG FASALVDDPV
501: WVMNVVPVEA SVNTLGVIYE RGLIGTYQNW CEAMSTYPRT YDFIHADSVF SLYKDRCDME DILLEMDRIL RPKGSVIIRD DIDVLTKVKK ITDAMQWEGR
601: IGDHENGPLE REKILFLVKE YWTAPAPDQS SDP

Arabidopsis Description

Probable methyltransferase PMT15 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPH9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.