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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, nucleus

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, unclear
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:golgi
 unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400047515 Potato cytosol, golgi, plasma membrane 97.32 97.32
Solyc08g075870.2.1 Tomato nucleus, unclear 82.58 82.58
VIT_02s0033g01120.t01 Wine grape cytosol 81.41 81.0
KRH76381 Soybean cytosol, golgi, plasma membrane 78.22 78.22
CDY09274 Canola cytosol, endoplasmic reticulum, golgi 77.05 77.83
CDX76494 Canola endoplasmic reticulum, golgi 75.71 77.13
KRH39668 Soybean endoplasmic reticulum 77.05 77.05
GSMUA_Achr4P27550_001 Banana extracellular, plasma membrane 74.37 76.95
Bra012557.1-P Field mustard cytosol, golgi, nucleus 77.05 76.54
Bra020975.1-P Field mustard endoplasmic reticulum, golgi 76.38 76.51
Os04t0218400-00 Rice cytosol 18.59 76.03
KRH07708 Soybean cytosol 76.05 75.92
KRH07206 Soybean cytosol, golgi, plasma membrane 76.05 75.92
GSMUA_Achr11P... Banana endoplasmic reticulum, golgi 73.37 75.91
AT4G19120.2 Thale cress cytosol, endoplasmic reticulum, golgi 76.21 75.83
AT1G31850.3 Thale cress cytosol, endoplasmic reticulum, golgi 76.38 75.62
CDY12278 Canola endoplasmic reticulum, golgi 75.88 75.5
Bra023213.1-P Field mustard endoplasmic reticulum, golgi 75.88 75.5
CDY22567 Canola endoplasmic reticulum, golgi 75.54 75.17
CDY67792 Canola cytosol, endoplasmic reticulum, golgi 75.71 74.96
CDY47695 Canola cytosol, endoplasmic reticulum, golgi 75.71 74.96
CDY47694 Canola cytosol, endoplasmic reticulum, golgi 75.54 74.79
Bra033872.1-P Field mustard endoplasmic reticulum, golgi, mitochondrion, plasma membrane 74.54 73.8
KRH07208 Soybean cytosol 74.37 73.51
GSMUA_Achr4P18470_001 Banana cytosol, extracellular, mitochondrion, plasma membrane 72.19 72.07
CDY01583 Canola endoplasmic reticulum, plasma membrane, vacuole 76.88 69.86
CDX98606 Canola vacuole 76.88 69.13
EER94413 Sorghum plasma membrane 70.02 68.19
CDY61681 Canola endoplasmic reticulum, golgi 75.88 66.42
HORVU1Hr1G051470.3 Barley endoplasmic reticulum 67.84 66.28
TraesCS1D01G202300.2 Wheat endoplasmic reticulum 67.5 66.28
CDX78919 Canola cytosol, golgi 76.21 64.36
Bra013374.1-P Field mustard cytosol, golgi 76.21 64.36
TraesCS1A01G198600.1 Wheat golgi 67.5 64.17
TraesCS1B01G213600.1 Wheat endoplasmic reticulum 67.17 62.95
GSMUA_Achr5P18010_001 Banana nucleus 74.2 59.22
Solyc01g009600.2.1 Tomato plastid 44.89 42.27
Solyc08g013740.2.1 Tomato unclear 44.22 41.84
Solyc01g091690.2.1 Tomato plastid 44.39 41.67
Solyc03g026120.2.1 Tomato plastid 45.06 41.38
Solyc03g116150.2.1 Tomato nucleus 40.2 41.1
Solyc05g007490.2.1 Tomato nucleus, plastid, unclear 41.88 40.85
Solyc06g035790.2.1 Tomato plastid 44.39 40.71
Solyc06g069870.2.1 Tomato endoplasmic reticulum 41.88 40.65
Solyc01g091640.2.1 Tomato nucleus 40.7 40.57
Solyc08g077240.2.1 Tomato nucleus 41.71 40.42
Solyc01g010870.2.1 Tomato nucleus, unclear 40.87 40.2
Solyc09g090190.2.1 Tomato nucleus 36.35 35.11
Solyc02g067890.2.1 Tomato nucleus 35.85 35.08
Solyc03g005600.2.1 Tomato nucleus, unclear 36.35 35.0
Solyc10g079450.1.1 Tomato plasma membrane 35.34 34.53
Solyc06g051000.2.1 Tomato plastid 35.68 33.18
Solyc05g052970.2.1 Tomato endoplasmic reticulum 36.52 32.15
Solyc04g058180.2.1 Tomato plastid 33.84 31.27
Solyc04g063230.2.1 Tomato cytosol, endoplasmic reticulum, nucleus 37.52 29.17
Solyc05g052500.2.1 Tomato endoplasmic reticulum, golgi, plasma membrane 36.01 27.56
Solyc05g056580.2.1 Tomato golgi 37.02 27.18
Solyc02g084670.2.1 Tomato unclear 37.69 25.48
Solyc04g080360.2.1 Tomato nucleus 31.66 24.29
Protein Annotations
Gene3D:3.40.50.150MapMan:35.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0008757
GO:GO:0016020GO:GO:0016021GO:GO:0016740GO:GO:0032259UniProt:K4CI40PFAM:PF03141
PANTHER:PTHR10108PANTHER:PTHR10108:SF984InterPro:Put_SAM_MeTrfaseInterPro:SAM-dependent_MTasesSUPFAM:SSF53335EnsemblPlantsGene:Solyc08g005490.2
EnsemblPlants:Solyc08g005490.2.1TMHMM:TMhelixUniParc:UPI000276BA5ESEG:seg::
Description
No Description!
Coordinates
chr8:-:361626..365816
Molecular Weight (calculated)
68220.7 Da
IEP (calculated)
8.637
GRAVY (calculated)
-0.485
Length
597 amino acids
Sequence
(BLAST)
001: MKHKDGKTHQ SDKSSWKVTV PLTVVVLCGL FFYLGGIFCS ERERYVAEPV NKAVDTPTGT ATVPVQIKAV SFPECSAEYQ DYTPCTDPKR WHKYGRHRLA
101: FLERHCPPSF ERQECLVPPP DGYKSPIRWP KSKNECWYRN VPYDWINKQK SNQHWLKKEG EKFLFPGGGT MFPNGVGAYV DLMQDLIPQM KDGTIRTAID
201: TGCGVASWGG DLLDRGILTV SLAPRDNHQA QVQFALERGI PAILGIISTQ RLPFPSNSFD MAHCSRCLIP WTEFGGVYLL EVHRILRPGG FWVLSGPPVN
301: YQRRWRGWNT TIEEQKSDYD KLQELLTSMC FKLFNKKDDI AVWRKLSDNS CYKKLDNPDN YPSKCDDGTE PDSAWYTPLR PCVVVPNPAA KKVKLDALPK
401: WPERLHTAPE RVSDVRGGSA GSFKHDDGKW KARAKHYKKL LPALGTDKIR NVMDMNTFYG GFAAAVIDDP LWVMNVVSSY APNTLSVVYD RGLIGTIHDW
501: CEAFSTYPRT YDLLHLDGLF SAESHRCEMK YVLLEMDRIL RPNGYAIIRE SSYFVDTIAT MAKGMRWSCR KEETEYGVEK EKILICQKKL WYSKQNS
Best Arabidopsis Sequence Match ( AT1G31850.1 )
(BLAST)
001: MKSGKQSSQP EKGTSRILSL TVLFIAFCGF SFYLGGIFCS ERDKIVAKDV TRTTTKAVAS PKEPTATPIQ IKSVSFPECG SEFQDYTPCT DPKRWKKYGV
101: HRLSFLERHC PPVYEKNECL IPPPDGYKPP IRWPKSREQC WYRNVPYDWI NKQKSNQHWL KKEGDKFHFP GGGTMFPRGV SHYVDLMQDL IPEMKDGTVR
201: TAIDTGCGVA SWGGDLLDRG ILSLSLAPRD NHEAQVQFAL ERGIPAILGI ISTQRLPFPS NAFDMAHCSR CLIPWTEFGG IYLLEIHRIV RPGGFWVLSG
301: PPVNYNRRWR GWNTTMEDQK SDYNKLQSLL TSMCFKKYAQ KDDIAVWQKL SDKSCYDKIA KNMEAYPPKC DDSIEPDSAW YTPLRPCVVA PTPKVKKSGL
401: GSIPKWPERL HVAPERIGDV HGGSANSLKH DDGKWKNRVK HYKKVLPALG TDKIRNVMDM NTVYGGFSAA LIEDPIWVMN VVSSYSANSL PVVFDRGLIG
501: TYHDWCEAFS TYPRTYDLLH LDSLFTLESH RCEMKYILLE MDRILRPSGY VIIRESSYFM DAITTLAKGI RWSCRREETE YAVKSEKILV CQKKLWFSSN
601: QTS
Arabidopsis Description
Probable methyltransferase PMT20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S7]
SUBAcon: [endoplasmic reticulum,golgi,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.