Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47695 | Canola | cytosol, endoplasmic reticulum, golgi | 93.2 | 93.2 |
| CDY67792 | Canola | cytosol, endoplasmic reticulum, golgi | 93.2 | 93.2 |
| Bra023213.1-P | Field mustard | endoplasmic reticulum, golgi | 92.54 | 93.0 |
| CDY12278 | Canola | endoplasmic reticulum, golgi | 92.37 | 92.83 |
| CDY22567 | Canola | endoplasmic reticulum, golgi | 92.21 | 92.67 |
| CDY47694 | Canola | cytosol, endoplasmic reticulum, golgi | 92.54 | 92.54 |
| Bra033872.1-P | Field mustard | endoplasmic reticulum, golgi, mitochondrion, plasma membrane | 92.04 | 92.04 |
| PGSC0003DMT400047515 | Potato | cytosol, golgi, plasma membrane | 75.79 | 76.55 |
| Solyc08g005490.2.1 | Tomato | nucleus, unclear | 75.62 | 76.38 |
| KRH76381 | Soybean | cytosol, golgi, plasma membrane | 75.62 | 76.38 |
| KRH39668 | Soybean | endoplasmic reticulum | 74.79 | 75.54 |
| GSMUA_Achr4P27550_001 | Banana | extracellular, plasma membrane | 71.14 | 74.35 |
| KRH07708 | Soybean | cytosol | 73.63 | 74.25 |
| KRH07206 | Soybean | cytosol, golgi, plasma membrane | 73.47 | 74.08 |
| AT4G19120.2 | Thale cress | cytosol, endoplasmic reticulum, golgi | 73.63 | 74.0 |
| Solyc08g075870.2.1 | Tomato | nucleus, unclear | 73.13 | 73.87 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 70.65 | 73.83 |
| Os04t0218400-00 | Rice | cytosol | 17.74 | 73.29 |
| PGSC0003DMT400079286 | Potato | cytosol | 72.47 | 73.2 |
| KRH07208 | Soybean | cytosol | 72.97 | 72.85 |
| GSMUA_Achr4P18470_001 | Banana | cytosol, extracellular, mitochondrion, plasma membrane | 70.32 | 70.9 |
| EER94413 | Sorghum | plasma membrane | 67.33 | 66.23 |
| TraesCS1D01G202300.2 | Wheat | endoplasmic reticulum | 64.51 | 63.98 |
| HORVU1Hr1G051470.3 | Barley | endoplasmic reticulum | 64.51 | 63.67 |
| TraesCS1A01G198600.1 | Wheat | golgi | 64.34 | 61.78 |
| TraesCS1B01G213600.1 | Wheat | endoplasmic reticulum | 64.18 | 60.75 |
| GSMUA_Achr5P18010_001 | Banana | nucleus | 70.98 | 57.22 |
| AT2G45750.1 | Thale cress | endoplasmic reticulum, golgi | 43.78 | 41.84 |
| AT4G10440.1 | Thale cress | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 43.28 | 41.23 |
| AT4G00750.1 | Thale cress | mitochondrion | 43.28 | 41.23 |
| AT1G33170.1 | Thale cress | cytosol | 43.12 | 40.69 |
| AT1G26850.2 | Thale cress | endoplasmic reticulum, golgi | 41.13 | 40.26 |
| AT4G18030.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plasma membrane | 41.29 | 40.1 |
| AT2G43200.2 | Thale cress | endoplasmic reticulum, golgi | 39.8 | 39.28 |
| AT4G00740.1 | Thale cress | golgi | 38.81 | 39.0 |
| AT2G40280.1 | Thale cress | extracellular, plasma membrane | 37.65 | 38.54 |
| AT3G56080.1 | Thale cress | endoplasmic reticulum, vacuole | 36.32 | 35.9 |
| AT4G14360.2 | Thale cress | endoplasmic reticulum, golgi | 34.66 | 34.38 |
| AT3G23300.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 34.49 | 34.04 |
| AT5G14430.1 | Thale cress | endoplasmic reticulum | 34.49 | 33.99 |
| AT1G77260.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 35.99 | 33.13 |
| AT1G04430.1 | Thale cress | endoplasmic reticulum, golgi | 34.0 | 32.91 |
| AT5G04060.1 | Thale cress | plasma membrane, plastid | 32.5 | 32.67 |
| AT3G10200.2 | Thale cress | extracellular, plasma membrane, vacuole | 31.84 | 32.05 |
| AT2G39750.1 | Thale cress | endoplasmic reticulum, golgi | 36.65 | 31.84 |
| AT5G06050.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 34.16 | 30.21 |
| AT2G34300.3 | Thale cress | endoplasmic reticulum, golgi, vacuole | 36.98 | 28.96 |
| AT1G29470.1 | Thale cress | golgi | 36.65 | 28.7 |
| AT5G64030.1 | Thale cress | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 37.15 | 27.02 |
| AT1G19430.1 | Thale cress | mitochondrion | 29.19 | 24.31 |
| AT3G51070.1 | Thale cress | extracellular, mitochondrion, plasma membrane, plastid, vacuole | 35.66 | 24.02 |
Protein Annotations
| Gene3D:3.40.50.150 | MapMan:35.1 | EntrezGene:840075 | ProteinID:AAG50728.1 | ProteinID:AEE31405.1 | ProteinID:AEE31406.1 |
| ProteinID:AEE31407.1 | EMBL:AF083759 | EMBL:AK319005 | ProteinID:ANM58540.1 | ArrayExpress:AT1G31850 | EnsemblPlantsGene:AT1G31850 |
| RefSeq:AT1G31850 | TAIR:AT1G31850 | RefSeq:AT1G31850-TAIR-G | EnsemblPlants:AT1G31850.3 | TAIR:AT1G31850.3 | EMBL:AY128291 |
| EMBL:BT000825 | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008757 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 |
| GO:GO:0032259 | RefSeq:NP_001319125.1 | RefSeq:NP_174468.1 | RefSeq:NP_849736.1 | RefSeq:NP_973949.1 | PFAM:PF03141 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR10108 | PANTHER:PTHR10108:SF984 | InterPro:Put_SAM_MeTrfase | UniProt:Q9C6S7 | InterPro:SAM-dependent_MTases | SUPFAM:SSF53335 |
| TMHMM:TMhelix | UniParc:UPI00000AC0C2 | : | : | : | : |
Description
Probable methyltransferase PMT20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S7]
Coordinates
chr1:+:11430257..11434115
Molecular Weight (calculated)
68800.6 Da
IEP (calculated)
8.932
GRAVY (calculated)
-0.443
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSGKQSSQP EKGTSRILSL TVLFIAFCGF SFYLGGIFCS ERDKIVAKDV TRTTTKAVAS PKEPTATPIQ IKSVSFPECG SEFQDYTPCT DPKRWKKYGV
101: HRLSFLERHC PPVYEKNECL IPPPDGYKPP IRWPKSREQC WYRNVPYDWI NKQKSNQHWL KKEGDKFHFP GGGTMFPRGV SHYVDLMQDL IPEMKDGTVR
201: TAIDTGCGVA SWGGDLLDRG ILSLSLAPRD NHEAQVQFAL ERGIPAILGI ISTQRLPFPS NAFDMAHCSR CLIPWTEFGG IYLLEIHRIV RPGGFWVLSG
301: PPVNYNRRWR GWNTTMEDQK SDYNKLQSLL TSMCFKKYAQ KDDIAVWQKL SDKSCYDKIA KNMEAYPPKC DDSIEPDSAW YTPLRPCVVA PTPKVKKSGL
401: GSIPKWPERL HVAPERIGDV HGGSANSLKH DDGKWKNRVK HYKKVLPALG TDKIRNVMDM NTVYGGFSAA LIEDPIWVMN VVSSYSANSL PVVFDRGLIG
501: TYHDWCEAFS TYPRTYDLLH LDSLFTLESH RCEMKYILLE MDRILRPSGY VIIRESSYFM DAITTLAKGI RWSCRREETE YAVKSEKILV CQKKLWFSSN
601: QTS
101: HRLSFLERHC PPVYEKNECL IPPPDGYKPP IRWPKSREQC WYRNVPYDWI NKQKSNQHWL KKEGDKFHFP GGGTMFPRGV SHYVDLMQDL IPEMKDGTVR
201: TAIDTGCGVA SWGGDLLDRG ILSLSLAPRD NHEAQVQFAL ERGIPAILGI ISTQRLPFPS NAFDMAHCSR CLIPWTEFGG IYLLEIHRIV RPGGFWVLSG
301: PPVNYNRRWR GWNTTMEDQK SDYNKLQSLL TSMCFKKYAQ KDDIAVWQKL SDKSCYDKIA KNMEAYPPKC DDSIEPDSAW YTPLRPCVVA PTPKVKKSGL
401: GSIPKWPERL HVAPERIGDV HGGSANSLKH DDGKWKNRVK HYKKVLPALG TDKIRNVMDM NTVYGGFSAA LIEDPIWVMN VVSSYSANSL PVVFDRGLIG
501: TYHDWCEAFS TYPRTYDLLH LDSLFTLESH RCEMKYILLE MDRILRPSGY VIIRESSYFM DAITTLAKGI RWSCRREETE YAVKSEKILV CQKKLWFSSN
601: QTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.