Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67390 | Canola | mitochondrion | 91.57 | 92.08 |
| Bra025737.1-P | Field mustard | mitochondrion | 91.16 | 91.67 |
| CDY26666 | Canola | mitochondrion | 90.06 | 90.93 |
| KRH05816 | Soybean | endoplasmic reticulum | 61.05 | 63.23 |
| VIT_18s0001g12470.t01 | Wine grape | mitochondrion | 62.85 | 62.85 |
| KRH15210 | Soybean | mitochondrion | 61.6 | 62.73 |
| PGSC0003DMT400009562 | Potato | golgi, mitochondrion | 59.94 | 55.78 |
| Solyc04g080360.2.1 | Tomato | nucleus | 59.39 | 55.27 |
| GSMUA_Achr6P05660_001 | Banana | mitochondrion | 51.66 | 53.66 |
| TraesCS5D01G418500.1 | Wheat | mitochondrion | 48.48 | 48.55 |
| TraesCS5B01G413400.3 | Wheat | mitochondrion | 48.07 | 48.2 |
| TraesCS5A01G408700.1 | Wheat | mitochondrion | 47.65 | 48.18 |
| HORVU5Hr1G099090.3 | Barley | mitochondrion | 47.51 | 48.04 |
| Os03t0775200-01 | Rice | mitochondrion | 47.93 | 47.6 |
| Zm00001d034250_P002 | Maize | mitochondrion | 47.1 | 46.65 |
| AT2G40280.1 | Thale cress | extracellular, plasma membrane | 33.29 | 40.92 |
| AT3G56080.1 | Thale cress | endoplasmic reticulum, vacuole | 32.6 | 38.69 |
| AT1G29470.1 | Thale cress | golgi | 38.26 | 35.97 |
| AT2G34300.3 | Thale cress | endoplasmic reticulum, golgi, vacuole | 37.57 | 35.32 |
| AT5G64030.1 | Thale cress | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 40.33 | 35.22 |
| AT1G77260.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 29.14 | 32.21 |
| AT2G39750.1 | Thale cress | endoplasmic reticulum, golgi | 30.11 | 31.41 |
| AT1G04430.1 | Thale cress | endoplasmic reticulum, golgi | 26.93 | 31.3 |
| AT4G14360.2 | Thale cress | endoplasmic reticulum, golgi | 26.24 | 31.25 |
| AT5G06050.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 29.42 | 31.23 |
| AT4G10440.1 | Thale cress | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 26.93 | 30.81 |
| AT3G23300.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 25.97 | 30.77 |
| AT5G04060.1 | Thale cress | plasma membrane, plastid | 25.41 | 30.67 |
| AT5G14430.1 | Thale cress | endoplasmic reticulum | 25.83 | 30.56 |
| AT3G51070.1 | Thale cress | extracellular, mitochondrion, plasma membrane, plastid, vacuole | 37.71 | 30.5 |
| AT4G19120.2 | Thale cress | cytosol, endoplasmic reticulum, golgi | 25.28 | 30.5 |
| AT4G00740.1 | Thale cress | golgi | 24.86 | 30.0 |
| AT2G43200.2 | Thale cress | endoplasmic reticulum, golgi | 25.14 | 29.79 |
| AT1G33170.1 | Thale cress | cytosol | 26.11 | 29.58 |
| AT2G45750.1 | Thale cress | endoplasmic reticulum, golgi | 25.69 | 29.48 |
| AT4G00750.1 | Thale cress | mitochondrion | 25.69 | 29.38 |
| AT1G31850.3 | Thale cress | cytosol, endoplasmic reticulum, golgi | 24.31 | 29.19 |
| AT4G18030.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plasma membrane | 24.86 | 28.99 |
| AT1G26850.2 | Thale cress | endoplasmic reticulum, golgi | 24.59 | 28.9 |
| AT3G10200.2 | Thale cress | extracellular, plasma membrane, vacuole | 23.62 | 28.55 |
| EER93372 | Sorghum | mitochondrion | 47.65 | 26.34 |
Protein Annotations
| Gene3D:3.40.50.150 | MapMan:35.1 | EntrezGene:838527 | ProteinID:AAF79446.1 | ProteinID:AEE29851.1 | ProteinID:ANM60983.1 |
| ArrayExpress:AT1G19430 | EnsemblPlantsGene:AT1G19430 | RefSeq:AT1G19430 | TAIR:AT1G19430 | RefSeq:AT1G19430-TAIR-G | EnsemblPlants:AT1G19430.1 |
| TAIR:AT1G19430.1 | EMBL:AY056127 | Unigene:At.26380 | EMBL:BT001953 | GO:GO:0000139 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005794 | GO:GO:0005802 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008757 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0032259 | RefSeq:NP_001323230.1 | RefSeq:NP_564084.1 |
| PFAM:PF03141 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR10108 | PANTHER:PTHR10108:SF733 | InterPro:Put_SAM_MeTrfase | UniProt:Q9LN50 | InterPro:SAM-dependent_MTases |
| SUPFAM:SSF53335 | TMHMM:TMhelix | UniParc:UPI000000BD62 | SEG:seg | : | : |
Description
Probable methyltransferase PMT28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN50]
Coordinates
chr1:-:6724413..6728072
Molecular Weight (calculated)
82665.9 Da
IEP (calculated)
6.133
GRAVY (calculated)
-0.594
Length
724 amino acids
Sequence
(BLAST)
(BLAST)
001: MMERKREMGI AYFARRIKQP RGIWVKMTFI VVLGLCFVFF WSFLSSSAST FNVQRESFDD IAEPVSSRTK SAHEVSESSK LHERGKVESG SKSKEGKKVG
101: GSSVHKHETK KKKEHAVSHP HKKKDVPKPV VEEVVVKEDQ EHEEAESDDS DQSNKEDGEE GTESDGNEGE SDGNGDGSVD DSSASVDEEV EEKNEEVTVN
201: EISKKRKRKG PVFDPKAEYS WRLCNTRSKH NYMPCIDNDG LIGRLQSYRH RERSCPKKPV MCLVPLPHDG YDPPVSWPES KSKILYKNVA HPKLAAYIKK
301: HNWVNETGEY LSFPQNQTTF NGNVLQYLEF IQEMVPDIEW GKNVRIVLDI GCSDSSFVAA LLDKDVLTVS LGLKDDLVDL AQVALERGFP TFVSSLASRR
401: LPFPSGVFDT IHCAACGVHW HSHGGKLLLE MNRILRPNGY FILSSNNDKI EDDEAMTALT ASICWNILAH KTEEASEMGV RIYQKPESND IYELRRKKNP
501: PLCEDNENPD AAWYVPMKTC IYEIPSAIEQ HGAEWPEEWP KRLETYPEWL TSKEKAMEDT NHWNAMVNKS YLTGLGIDWL HIRNVMDMTA IYGGFGASLV
601: KQNVWVMNVV PVHSPDTLPF IYERGLLGIY HDWCEPFGTY PRSYDLLHAD HLFSRLKNRC KQPASIVVEM DRLTRPGGWV VVRDKVEILE PLEEILRSLH
701: WEIRMTYAQD KEGMLCAQKT LWRP
101: GSSVHKHETK KKKEHAVSHP HKKKDVPKPV VEEVVVKEDQ EHEEAESDDS DQSNKEDGEE GTESDGNEGE SDGNGDGSVD DSSASVDEEV EEKNEEVTVN
201: EISKKRKRKG PVFDPKAEYS WRLCNTRSKH NYMPCIDNDG LIGRLQSYRH RERSCPKKPV MCLVPLPHDG YDPPVSWPES KSKILYKNVA HPKLAAYIKK
301: HNWVNETGEY LSFPQNQTTF NGNVLQYLEF IQEMVPDIEW GKNVRIVLDI GCSDSSFVAA LLDKDVLTVS LGLKDDLVDL AQVALERGFP TFVSSLASRR
401: LPFPSGVFDT IHCAACGVHW HSHGGKLLLE MNRILRPNGY FILSSNNDKI EDDEAMTALT ASICWNILAH KTEEASEMGV RIYQKPESND IYELRRKKNP
501: PLCEDNENPD AAWYVPMKTC IYEIPSAIEQ HGAEWPEEWP KRLETYPEWL TSKEKAMEDT NHWNAMVNKS YLTGLGIDWL HIRNVMDMTA IYGGFGASLV
601: KQNVWVMNVV PVHSPDTLPF IYERGLLGIY HDWCEPFGTY PRSYDLLHAD HLFSRLKNRC KQPASIVVEM DRLTRPGGWV VVRDKVEILE PLEEILRSLH
701: WEIRMTYAQD KEGMLCAQKT LWRP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.