CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034250_P002	Maize	mitochondrion	52.6	94.25
Os03t0775200-01	Rice	mitochondrion	44.58	80.11
HORVU5Hr1G099090.3	Barley	mitochondrion	42.82	78.35
TraesCS5A01G408700.1	Wheat	mitochondrion	42.21	77.23
TraesCS5B01G413400.3	Wheat	mitochondrion	42.21	76.59
TraesCS5D01G418500.1	Wheat	mitochondrion	42.14	76.35
GSMUA_Achr6P05660_001	Banana	mitochondrion	31.14	58.54
KRH05816	Soybean	endoplasmic reticulum	28.24	52.93
KRH15210	Soybean	mitochondrion	28.24	52.04
VIT_18s0001g12470.t01	Wine grape	mitochondrion	27.94	50.55
CDY26666	Canola	mitochondrion	26.56	48.54
Bra025737.1-P	Field mustard	mitochondrion	26.56	48.33
CDY67390	Canola	mitochondrion	26.56	48.33
AT1G19430.1	Thale cress	mitochondrion	26.34	47.65
Solyc04g080360.2.1	Tomato	nucleus	27.63	46.53
PGSC0003DMT400009562	Potato	golgi, mitochondrion	27.33	46.02
EES11713	Sorghum	plastid	20.31	37.68
EES03991	Sorghum	plastid	21.3	35.27
OQU91634	Sorghum	endoplasmic reticulum, golgi	15.8	33.6
KXG26938	Sorghum	endoplasmic reticulum, golgi, mitochondrion, plastid	14.89	33.28
EER94782	Sorghum	endoplasmic reticulum, golgi, vacuole	15.04	32.3
EER89033	Sorghum	cytosol	14.81	31.29
EES03874	Sorghum	mitochondrion	16.41	31.25
EER93951	Sorghum	peroxisome	15.11	31.08
OQU87776	Sorghum	endoplasmic reticulum, golgi	15.73	30.43
EER96732	Sorghum	endoplasmic reticulum, golgi	14.35	30.42
KXG38879	Sorghum	mitochondrion	13.97	30.3
OQU77908	Sorghum	plasma membrane, plastid	14.35	30.27
KXG26943	Sorghum	plastid	14.73	30.11
OQU88046	Sorghum	plastid	14.05	29.68
OQU77087	Sorghum	mitochondrion	20.84	29.58
EES08114	Sorghum	golgi, mitochondrion, plastid, vacuole	20.15	29.53
EER94413	Sorghum	plasma membrane	13.74	29.36
EES05735	Sorghum	mitochondrion, plastid	14.81	29.13
EES08791	Sorghum	golgi	13.59	28.21
KXG23110	Sorghum	endoplasmic reticulum	20.69	24.91

Protein Annotations

Gene3D:3.20.20.70	Gene3D:3.40.50.150	Gene3D:3.40.50.360	MapMan:35.1	InterPro:Aldolase_TIM	UniProt:C5WZ58
EnsemblPlants:EER93372	ProteinID:EER93372	ProteinID:EER93372.2	InterPro:Flavodoxin/NO_synth	InterPro:Flavoprotein-like_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757	GO:GO:0009987	GO:GO:0010181
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0032259	GO:GO:0051536	GO:GO:0051539
InterPro:IPR008254	InterPro:IPR013785	InterPro:IPR029039	PFAM:PF00258	PFAM:PF03141	PFAM:PF04055
PFAM:PF08608	PFscan:PS50902	PANTHER:PTHR10108	PANTHER:PTHR10108:SF733	InterPro:Put_SAM_MeTrfase	InterPro:SAM-dependent_MTases
EnsemblPlantsGene:SORBI_3001G073150	SUPFAM:SSF102114	SUPFAM:SSF52218	SUPFAM:SSF53335	unigene:Sbi.4782	TMHMM:TMhelix
UniParc:UPI000B8B9CDE	RefSeq:XP_002466374.1	InterPro:rSAM	SEG:seg	InterPro:tRNA_wybutosine-synth	InterPro:tRNA_wybutosine-synthase

Description

hypothetical protein

Coordinates

chr1:-:5555109..5564896

Molecular Weight (calculated)

145485.0 Da

IEP (calculated)

6.414

GRAVY (calculated)

-0.477

Length

1310 amino acids

Sequence
(BLAST)

0001: MTVARGPPGR PSSGLLGCWR RRPALGFGAK VGIAIALGLS FAIIWTSLSP TSSSQQISTE RSSFAAEVAA PPTAFHNRTA GGGGGHAHRK PRPVPHSHKK
0101: RHPAPSGSHS HPHRSNATAS LDAAAVKADH SEPAPVTDPG PKEKEPEQEQ EQEQEPDMEM EPEQEAELPM PEQGGDNSGK APAEEDEEKP PQLELEDEPS
0201: EDDGEEDDPE AAKRKAPSKK RKLPPLFSPG AHYHWKLCGA KSSYHYIPCV DFDGDGSQRH HERSCPRSPV TCLVSLPKEY KQPAAWPERK DKVWYGNVGH
0301: PRLSNYVKGH NWLNHSGEYL MFPPDEWEFK GSARHYVESI DEMAPDIDWG KNIRIILDVG CKSAGFGIAL LKKDVITLSL GLMNDQTDLA QVALERGIPA
0401: TVGSLGSRRL PFPSGAFDAI HCGDCNIPWH SNGGKLLLEI NRILRPGGYF IISSKSADLE SEEGISASMT ALCWNAIAYN SDDVSEAGVK IFQRPASNEV
0501: YDLRAKKDPP FCKEEQNKAS AWYTHIKHCL HKAPVGIEER GSDWPEEWPK RLESFPEWLG DTQTRVASDH NHWKAVVEKS YLDGLGIDWS NIRNVMDMRA
0601: VFGGFAAALA SKKVWVMNVV PVHAADTLPI IYERGLIGVY HDWCEPFSTY PRSYDLLHAD HLFSRLKIRC KQPVSIVVEM DRILRPGGWA IIRDKLGILD
0701: PLETILKSLH WEIVMTFRKD KEGIMSHLSA RLTADAGFPV RASDAATFDP DDLPSVPLLL LVIPTHDGGA PPPSAAFLSR WLEESAADFR AGALLLSGLR
0801: FAVFGVGSRA YGETFNAAAK SFSRWLRALG AVEVVPFGEG DMDGGDLEAV FEEWSRRVLR VVKGEEVGYG ANEKSNGLDE LELEGEDWDD DDEEEMVDGE
0901: VDMEDIAGKA PARRKNGNLE GVVANGVQNG VKDMVTPIIR TSLEKQGYKI IGSHSGVKIC RWTKSQLRGR GGCYKHSFYG IESHRCMEAT PSLACANKCV
1001: FCWRHHTNPV GKSWKWKMDD PLDIVNAAID QHTKMVKQMK GVPGVKPEKL EEGLSPRHCA LSLVGEPIMY PEINALVDEL HRRHISTFLV TNAQFPEKIK
1101: ALKPITQLYV SVDAATKESL KAVDRPLFSD FWERFLDSLK SLHEKDQRTV YRLTLVKGWN AEEIDAYAKL LDLGQPDFIE IKGVTYCGSS ATSKLTMENV
1201: PWHSDVKEFS EVLASKSGGV YEVACEHAHS CCVLLAKVDK FKINGKWHTW IDYDRFHELV TSGKPFKSRD YMAMTPSWAV YGAEEGGFDP DQSRFKKERR
1301: HGTAAHKSLS

Best Arabidopsis Sequence Match ( AT1G75200.1 )
(BLAST)

001: MSTTSSVRVR LAFVALLSAT TFYCIHKYRR LKHLKNLSLN PSSTLKASRG KIFFISQTGT AKALAQRLHE LCASNDIAFD IVDPHSYEPE DLPKETLVLF
101: IASTWDGGKP PKNGEFLVNW LGESAEDFRV GSLLLSDCKF AVFGVGSRAY GESYNAVAKE LSSRMIGLGG LEMIPVGEGD VDDGELDRAF QDWCDGVIRV
201: LKGGSAQETN GVSQQIGAVE DDLEYYDSTD EEDEDNDADG GIVDLEDIAG KAPSKRNGVV KVTKVDGKKE MVTPVIRASL TKQGYKIIGS HSGVKICRWT
301: KSQLRGRGGC YKHSFYGIES HRCMETTPSL ACANKCVFCW RHHTNPVGKS WQWKMDEPSV IVKGALDLHK NMIKQMKGVP GVTPEKLQEG LNPRHCALSL
401: VGEPIMYPEI NALVDELHGR RISTFLVTNA QFPEKILMMK PITQLYVSVD AATKESLKAI DRPLFADFWE RFIDSLKALQ EKQQRTVYRL TLVKGWNTEE
501: LDAYFNLFSI GKPDFIEIKG VTYCGSSATS KLTMENVPWH TDVKAFSEAL SLKSNGEYEV ACEHAHSCCV LLGRTEKFKV DGKWFTWIDY EKFHDLVASG
601: EPFTSTDYMA QTPSWAVYGA QEGGFDPGQL RYKKERNHPP KPQAVLA

Arabidopsis Description

TYW1S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN5]
SUBAcon: [mitochondrion,endoplasmic reticulum,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.