Factsheet for Solyc04g080360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
golgi 2
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009562	Potato	golgi, mitochondrion	97.04	97.04
KRH05816	Soybean	endoplasmic reticulum	57.71	64.23
KRH15210	Soybean	mitochondrion	58.23	63.71
VIT_18s0001g12470.t01	Wine grape	mitochondrion	59.0	63.4
CDY26666	Canola	mitochondrion	55.66	60.39
Bra025737.1-P	Field mustard	mitochondrion	55.4	59.86
CDY67390	Canola	mitochondrion	55.14	59.58
AT1G19430.1	Thale cress	mitochondrion	55.27	59.39
GSMUA_Achr6P05660_001	Banana	mitochondrion	52.06	58.11
TraesCS5D01G418500.1	Wheat	mitochondrion	47.43	51.04
HORVU5Hr1G099090.3	Barley	mitochondrion	46.66	50.7
TraesCS5B01G413400.3	Wheat	mitochondrion	47.04	50.69
Os03t0775200-01	Rice	mitochondrion	47.43	50.62
TraesCS5A01G408700.1	Wheat	mitochondrion	46.53	50.56
Zm00001d034250_P002	Maize	mitochondrion	46.02	48.97
Solyc06g051000.2.1	Tomato	plastid	30.21	36.6
Solyc04g063230.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	35.48	35.94
Solyc05g056580.2.1	Tomato	golgi	36.89	35.3
Solyc05g052970.2.1	Tomato	endoplasmic reticulum	29.31	33.63
Solyc09g090190.2.1	Tomato	nucleus	25.58	32.2
Solyc03g005600.2.1	Tomato	nucleus, unclear	25.58	32.1
Solyc08g075870.2.1	Tomato	nucleus, unclear	24.55	31.99
Solyc04g058180.2.1	Tomato	plastid	26.35	31.73
Solyc01g091640.2.1	Tomato	nucleus	24.42	31.72
Solyc08g005490.2.1	Tomato	nucleus, unclear	24.29	31.66
Solyc06g069870.2.1	Tomato	endoplasmic reticulum	24.81	31.38
Solyc02g084670.2.1	Tomato	unclear	35.48	31.26
Solyc03g116150.2.1	Tomato	nucleus	23.39	31.16
Solyc01g091690.2.1	Tomato	plastid	25.45	31.13
Solyc05g007490.2.1	Tomato	nucleus, plastid, unclear	24.42	31.05
Solyc08g077240.2.1	Tomato	nucleus	24.55	31.01
Solyc10g079450.1.1	Tomato	plasma membrane	24.16	30.77
Solyc05g052500.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	30.59	30.51
Solyc03g026120.2.1	Tomato	plastid	25.45	30.46
Solyc02g067890.2.1	Tomato	nucleus	23.78	30.33
Solyc06g035790.2.1	Tomato	plastid	25.32	30.26
Solyc01g010870.2.1	Tomato	nucleus, unclear	23.52	30.15
Solyc01g009600.2.1	Tomato	plastid	24.42	29.97
Solyc08g013740.2.1	Tomato	unclear	24.16	29.79
EER93372	Sorghum	mitochondrion	46.53	27.63

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0032259	UniProt:K4BVB5	PFAM:PF03141	PANTHER:PTHR10108	PANTHER:PTHR10108:SF733
InterPro:Put_SAM_MeTrfase	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	EnsemblPlantsGene:Solyc04g080360.2	EnsemblPlants:Solyc04g080360.2.1	TMHMM:TMhelix
UniParc:UPI000276587B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:64566435..64571429

Molecular Weight (calculated)

88519.0 Da

IEP (calculated)

6.422

GRAVY (calculated)

-0.681

Length

778 amino acids

Sequence
(BLAST)

001: MRKHNTALTR FGRKVKGSYQ SYGLGVKLAA VVILGLCFVF IWSVFSPSSY SVAYQRDTFD DIREPISSAN RKKVTPLVPS TKKEQPHNKK LKHRSSSGEK
101: KKRVDRSSLP SKSGGWHKND KSGVDRKRKG EDLKLPEKVD EVKEQELEGS ETDVLEKENE EDKIGNDKQE EEKKVVEVKE NEKEKTENNS KQEGEGVDGK
201: ENEKEEIEST KEEEGEGEGE GTVDGNEGNG EIANTEELDQ EAAEKVEDED EKAKDNGKKN KNLGPLFDPK AHYTWNLCST RSKHNYIPCI DFESASGKLQ
301: NYRHHERSCP KAPQMCLVPL PPGGYETPVS WPESKSKIHY KNVAHPKLEV YVKKESWVVE SGDYLIFPTN QSIPKGGIQH YLDFIEEMVP DIEWGKNIRV
401: VLDIGCEDSS FGASLLEKDV LTLTLGLKDD LVDLAQVALE RGFPAVVTPF GTRRLPFPSG VFDAIHCNDC HASWHSNGGK HLIEMNRILR PGGYFILSST
501: HSSIEVEEGM STLTASICWN ILADKTDEIS DIRIKLYQKP QANEIYQLRR KKVPPLCKAN ENPDASWYVP IKSCLHTIPE SIEQRGTEWP EEWPKRLETY
601: PEWMNNREKL IADSEHWKAI VDHSYLVGLG IEWSNIRNVM DMKAINGGFA AALAQQKVWV MNVIPVHAPN TLPVVFERGL IGVYHDWCEA FGTYPRSYDL
701: LHADHLFSRL KNRCKHPIVI VVEMDRILRP GGWGIIRDKV EILDPLEKIL RSLHWEIRMT FAKDKEGILC AQKTMWRP

Best Arabidopsis Sequence Match ( AT1G19430.3 )
(BLAST)

001: MMERKREMGI AYFARRIKQP RGIWVKMTFI VVLGLCFVFF WSFLSSSAST FNVQRESFDD IAEPVSSRTK SAHEVSESSK LHERGKVESG SKSKEGKKVG
101: GSSVHKHETK KKKEHAVSHP HKKKDVPKPV VEEVVVKEDQ EHEEAESDDS DQSNKEDGEE GTESDGNEGE SDGNGDGSVD DSSASVDEEV EEKNEEVTVN
201: EISKKRKRKG PVFDPKAEYS WRLCNTRSKH NYMPCIDNDG LIGRLQSYRH RERSCPKKPV MCLVPLPHDG YDPPVSWPES KSKILYKNVA HPKLAAYIKK
301: HNWVNETGEY LSFPQNQTTF NGNVLQYLEF IQEMVPDIEW GKNVRIVLDI GCSDSSFVAA LLDKDVLTVS LGLKDDLVDL AQVALERGFP TFVSSLASRR
401: LPFPSGVFDT IHCAACGVHW HSHGGKLLLE MNRILRPNGY FILSSNNDKI EDDEAMTALT ASICWNILAH KTEEASEMGV RIYQKPESND IYELRRKKNP
501: PLCEDNENPD AAWYVPMKTC IYEIPSAIEQ HGAEWPEEWP KRLETYPEWL TSKEKAMEDT NHWNAMVNKS YLTGLGIDWL HIRNVMDMTA IYGGFGASLV
601: KQNVWVMNVV PVHSPDTLPF IYERGLLGIY HDWCEPFGTY PRSYDLLHAD HLFSRLKNRC KQPASIVVEM DRLTRPGGWV VVRDKVEILE PLEEILRSLH
701: WEIRMTYAQD KEGMLCAQKT LWRP

Arabidopsis Description

Probable methyltransferase PMT28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN50]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.