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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • endoplasmic reticulum 3
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
  • golgi 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid, unclear
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:mitochondrion
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:golgi
 plastid: 26371478
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400080300 Potato endoplasmic reticulum, golgi 98.53 98.53
Solyc01g010870.2.1 Tomato nucleus, unclear 85.29 86.0
KRH74853 Soybean endoplasmic reticulum, golgi 78.92 79.57
KRH70718 Soybean endoplasmic reticulum 78.92 79.57
CDY50730 Canola cytosol 64.38 79.44
KRH45909 Soybean endoplasmic reticulum 77.61 78.12
KRG99086 Soybean endoplasmic reticulum 77.45 77.96
CDY46435 Canola endoplasmic reticulum, golgi 75.33 76.45
CDY16198 Canola endoplasmic reticulum, golgi 75.65 76.4
CDY40268 Canola endoplasmic reticulum, golgi 75.65 76.4
AT1G26850.2 Thale cress endoplasmic reticulum, golgi 76.63 76.14
CDY45006 Canola endoplasmic reticulum, golgi 75.0 75.87
Bra024678.1-P Field mustard endoplasmic reticulum, golgi 75.65 75.41
Bra016293.1-P Field mustard endoplasmic reticulum, golgi 75.16 75.29
Bra012437.1-P Field mustard endoplasmic reticulum, golgi 75.49 75.24
GSMUA_Achr3P01520_001 Banana endoplasmic reticulum, golgi 72.06 74.75
GSMUA_Achr10P... Banana endoplasmic reticulum, golgi 75.33 74.72
VIT_01s0026g02340.t01 Wine grape golgi 77.29 74.37
TraesCS5D01G234300.1 Wheat endoplasmic reticulum, golgi 74.51 74.27
TraesCS5B01G225500.1 Wheat cytosol, endoplasmic reticulum, golgi 74.35 74.1
Solyc06g069870.2.1 Tomato endoplasmic reticulum 74.35 73.98
Zm00001d020461_P001 Maize plasma membrane 74.02 73.66
TraesCS5A01G226900.1 Wheat golgi 73.86 73.62
HORVU5Hr1G065680.2 Barley cytosol, endoplasmic reticulum, golgi 73.69 73.45
GSMUA_Achr8P16940_001 Banana endoplasmic reticulum, golgi 42.81 73.39
EER96732 Sorghum endoplasmic reticulum, golgi 74.02 73.3
GSMUA_Achr3P20050_001 Banana endoplasmic reticulum, golgi 70.42 73.05
Os09t0415700-01 Rice golgi 72.71 72.24
Solyc03g116150.2.1 Tomato nucleus 68.63 71.92
HORVU5Hr1G102720.2 Barley cytosol 59.8 71.62
Os03t0379100-01 Rice endoplasmic reticulum, golgi, vacuole 68.95 69.07
EER94782 Sorghum endoplasmic reticulum, golgi, vacuole 68.63 68.85
TraesCS5D01G429900.1 Wheat endoplasmic reticulum, golgi, vacuole 68.46 68.46
TraesCS5B01G423200.2 Wheat cytosol, endoplasmic reticulum, golgi, mitochondrion 68.46 67.47
TraesCS5A01G421600.2 Wheat endoplasmic reticulum 68.3 67.31
Solyc08g077240.2.1 Tomato nucleus 67.16 66.72
Zm00001d029336_P002 Maize cytosol 68.95 61.43
Zm00001d047183_P002 Maize golgi 59.8 58.65
Solyc08g013740.2.1 Tomato unclear 54.58 52.93
Solyc06g035790.2.1 Tomato plastid 54.41 51.15
Solyc03g026120.2.1 Tomato plastid 53.76 50.62
Solyc01g009600.2.1 Tomato plastid 52.29 50.47
Solyc01g091690.2.1 Tomato plastid 50.49 48.58
Solyc08g005490.2.1 Tomato nucleus, unclear 40.85 41.88
Solyc01g091640.2.1 Tomato nucleus 40.85 41.74
Solyc08g075870.2.1 Tomato nucleus, unclear 39.71 40.7
Solyc09g090190.2.1 Tomato nucleus 37.58 37.22
Solyc02g067890.2.1 Tomato nucleus 36.76 36.89
Solyc03g005600.2.1 Tomato nucleus, unclear 37.09 36.61
Solyc10g079450.1.1 Tomato plasma membrane 33.5 33.55
Solyc05g052970.2.1 Tomato endoplasmic reticulum 36.76 33.19
Solyc06g051000.2.1 Tomato plastid 34.15 32.55
Solyc04g058180.2.1 Tomato plastid 33.99 32.2
Solyc04g063230.2.1 Tomato cytosol, endoplasmic reticulum, nucleus 36.93 29.43
Solyc05g056580.2.1 Tomato golgi 37.42 28.17
Solyc05g052500.2.1 Tomato endoplasmic reticulum, golgi, plasma membrane 35.29 27.69
Solyc02g084670.2.1 Tomato unclear 36.44 25.25
Solyc04g080360.2.1 Tomato nucleus 31.05 24.42
Protein Annotations
Gene3D:3.40.50.150MapMan:35.1ncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0008168
GO:GO:0008757GO:GO:0016020GO:GO:0016021GO:GO:0016740GO:GO:0032259UniProt:K4BWS4
PFAM:PF03141PANTHER:PTHR10108PANTHER:PTHR10108:SF1061InterPro:Put_SAM_MeTrfaseInterPro:SAM-dependent_MTasesSUPFAM:SSF53335
EnsemblPlantsGene:Solyc05g007490.2EnsemblPlants:Solyc05g007490.2.1TMHMM:TMhelixUniParc:UPI0002765CA7::
Description
No Description!
Coordinates
chr5:-:2047102..2053065
Molecular Weight (calculated)
68824.3 Da
IEP (calculated)
7.560
GRAVY (calculated)
-0.420
Length
612 amino acids
Sequence
(BLAST)
001: MAGKNSGDNR TRTSVSIFII AGLCCFFYLL GAWQRSGFGK GDSIAVAVTK TAGENCDVLP NLNFETRHAG EAGGTDESEE VEELKPCDPQ YTDYTPCQDQ
101: KRAMTFPREN MNYRERHCPP QEEKLHCLIP APKGYVTPFP WPKSRDYVPY ANAPYKSLTV EKAIQNWVQY EGNVFRFPGG GTQFPQGADK YIDQLASVVP
201: IENGTVRTAL DTGCGVASWG AYLWKRNVIA MSFAPRDSHE AQVQFALERG VPAVIGVLGT IKMPYPSKAF DMAHCSRCLI PWGAADGILM MEVDRVLRPG
301: GYWVLSGPPI NWKVNFKAWQ RPKEDLEEEQ RKIEEAAKLL CWEKISEKGE TAIWQKRKDS ASCRSAQENS AAKVCKPSDP DSVWYNKMEM CITPNNGNGG
401: DESLKPFPER LYAVPPRIAN GLVSGVSVEK YQEDSKKWKK HVSAYKKINK LLDTGRYRNI MDMNAGLGGF AAALHDPKFW VMNVMPTIAE KNTLGVVFER
501: GLIGIYHDWC EAFSTYPRTY DLIHANGLFS LYKDKCDFQD ILLEMDRILR PEGAVILRDN VDVLIKVKKI IGGMRWNFKL MDHEDGPLVP EKILVAVKQY
601: WTLGDTNSTS SQ
Best Arabidopsis Sequence Match ( AT1G26850.2 )
(BLAST)
001: MALKSSSADG KTRSSVQIFI VFSLCCFFYI LGAWQRSGFG KGDSIALEMT NSGADCNIVP SLNFETHHAG ESSLVGASEA AKVKAFEPCD GRYTDYTPCQ
101: DQRRAMTFPR DSMIYRERHC APENEKLHCL IPAPKGYVTP FSWPKSRDYV PYANAPYKAL TVEKAIQNWI QYEGDVFRFP GGGTQFPQGA DKYIDQLASV
201: IPMENGTVRT ALDTGCGVAS WGAYLWSRNV RAMSFAPRDS HEAQVQFALE RGVPAVIGVL GTIKLPYPTR AFDMAHCSRC LIPWGANDGM YLMEVDRVLR
301: PGGYWILSGP PINWKVNYKA WQRPKEDLQE EQRKIEEAAK LLCWEKKYEH GEIAIWQKRV NDEACRSRQD DPRANFCKTD DTDDVWYKKM EACITPYPET
401: SSSDEVAGGE LQAFPDRLNA VPPRISSGSI SGVTVDAYED DNRQWKKHVK AYKRINSLLD TGRYRNIMDM NAGFGGFAAA LESQKLWVMN VVPTIAEKNR
501: LGVVYERGLI GIYHDWCEAF STYPRTYDLI HANHLFSLYK NKCNADDILL EMDRILRPEG AVIIRDDVDT LIKVKRIIAG MRWDAKLVDH EDGPLVPEKV
601: LIAVKQYWVT NSTSTH
Arabidopsis Description
Probable methyltransferase PMT2 [Source:UniProtKB/Swiss-Prot;Acc:B9DFI7]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.