Factsheet for Solyc02g084670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 4
mitochondrion 3
endoplasmic reticulum 1
nucleus 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009110	Potato	cytosol	88.79	95.61
VIT_04s0023g02790.t01	Wine grape	cytosol	45.3	79.05
CDY33299	Canola	nucleus	44.96	65.73
CDY66535	Canola	nucleus	45.87	61.83
KRH28732	Soybean	endoplasmic reticulum	53.0	60.94
KRH76730	Soybean	endoplasmic reticulum, golgi, plastid	53.79	59.67
CDY26534	Canola	extracellular, golgi, mitochondrion, plasma membrane, plastid	50.17	57.76
GSMUA_Achr4P19870_001	Banana	golgi, mitochondrion	51.42	55.03
Os06t0712800-01	Rice	cytosol	27.75	54.81
AT3G51070.1	Thale cress	extracellular, mitochondrion, plasma membrane, plastid, vacuole	54.7	53.97
Bra038881.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, plastid, vacuole	54.7	53.55
Solyc05g056580.2.1	Tomato	golgi	48.24	52.4
KRH69842	Soybean	mitochondrion	48.13	51.45
Solyc04g063230.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	44.28	50.91
Bra036837.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid, vacuole	52.43	50.66
HORVU0Hr1G021970.3	Barley	cytosol, nucleus	44.85	49.32
OQU77087	Sorghum	mitochondrion	48.36	46.26
Solyc06g051000.2.1	Tomato	plastid	33.52	46.11
TraesCS7D01G380100.1	Wheat	mitochondrion	47.34	45.78
TraesCS7B01G286500.1	Wheat	mitochondrion	47.23	45.62
TraesCS7A01G383700.2	Wheat	plastid	44.62	42.97
Solyc09g090190.2.1	Tomato	nucleus	27.75	39.64
Solyc03g005600.2.1	Tomato	nucleus, unclear	27.07	38.55
Zm00001d036423_P002	Maize	mitochondrion	35.79	38.44
Solyc03g116150.2.1	Tomato	nucleus	25.25	38.18
Solyc05g052970.2.1	Tomato	endoplasmic reticulum	28.99	37.76
Solyc08g005490.2.1	Tomato	nucleus, unclear	25.48	37.69
Solyc08g075870.2.1	Tomato	nucleus, unclear	25.37	37.52
Solyc01g091640.2.1	Tomato	nucleus	25.14	37.06
Solyc05g052500.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	32.62	36.92
Solyc02g067890.2.1	Tomato	nucleus	25.48	36.89
Solyc05g007490.2.1	Tomato	nucleus, plastid, unclear	25.25	36.44
Solyc01g010870.2.1	Tomato	nucleus, unclear	25.03	36.41
Solyc06g069870.2.1	Tomato	endoplasmic reticulum	25.25	36.26
Solyc10g079450.1.1	Tomato	plasma membrane	24.92	36.01
Solyc04g080360.2.1	Tomato	nucleus	31.26	35.48
Solyc08g077240.2.1	Tomato	nucleus	24.69	35.39
Solyc01g091690.2.1	Tomato	plastid	25.37	35.22
Solyc08g013740.2.1	Tomato	unclear	25.14	35.18
Solyc04g058180.2.1	Tomato	plastid	25.48	34.83
Solyc01g009600.2.1	Tomato	plastid	24.46	34.07
Solyc03g026120.2.1	Tomato	plastid	24.92	33.85
Solyc06g035790.2.1	Tomato	plastid	24.8	33.64
CDY33300	Canola	plastid	5.78	21.34

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0032259	UniProt:K4BAY2	PFAM:PF03141
PANTHER:PTHR10108	PANTHER:PTHR10108:SF944	InterPro:Put_SAM_MeTrfase	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	EnsemblPlantsGene:Solyc02g084670.2
EnsemblPlants:Solyc02g084670.2.1	TMHMM:TMhelix	UniParc:UPI0002768C3E	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:47753529..47756992

Molecular Weight (calculated)

99396.1 Da

IEP (calculated)

6.484

GRAVY (calculated)

-0.650

Length

883 amino acids

Sequence
(BLAST)

001: MPTTRARLGR RPSSSSYSST ITTIVFVSLC VLGVWLLTST SVVPPKSTSR TATTDSTPSS FTSTIMNAHK TISNAVKPTP VFKDSQGDLP DDALKTGDAN
101: RPQDTSEIDK LQTDVSSDIT KDGGGDALNV NVDQSLQGNE NVKPEMEKKN VNPVVAENAQ GLHGTESVDE REKQKQLETQ TSEESSITHK QEAEQITAAT
201: GKTTTGKEKA EEDVSLDSGN DAHGVATDNT KNLLSDHEQQ IRLEQHQQQE DDQMQQKPKQ PEEHTQGVTS KDQIKHDEAP LLKDVKIQND HKAPVNLTNN
301: PPVLKNENNK TEMIVPKESK ESKKAWSTQA DQSVNQKERR TVGKNNQDSS VPEQNWQLCE VEALADYIPC LDNEDAIKKL KSTKHYEHRE RHCPQEPPTC
401: LVPLPEGYKP SIEWPTSRDK IWYHNVPHTL LAEVKGHQNW VKVSGEFLTF PGGGTQFIHG ALHYLDFVQE AVPDIAWGKR TRTVLDVGCG VASFGGYLFE
501: RDVLAMSFAP KDEHEAQVQF ALERGIPAIS AVMGTQRLPF PSGVFDLVHC ARCRVPWHEE GGALLLELNR VLRPGGYFAW SATPVYQTLE EDVEIWKEMS
601: NLTVAMCWEL ITIKKDKLNS AGVAIYHKSD TNECYDQRKQ NKPPMCKQDD DPNAAWYVPF NSCMHRVPSK ETERGYRWPV EWPERLQTPP YWLNRSQIGI
701: YGKPAPDDFK ADLEHWKRLI SKVYMKGLGI SWSNVRNAMD MRAVYGGFAA ALRDLKLWVV NVVNVNAPDT LPIIYERGLF GIYHDWCESF STYPRTYDLL
801: HADHLFSQLK KRCKIVAVMA EVDRIVRPGG KLIVRDDSAT TKEVENLLKS LHWEIRKTIF QNQVGILSAQ KTFWRPNATA APT

Best Arabidopsis Sequence Match ( AT3G51070.1 )
(BLAST)

001: MAFGRGRGNK RTSTSSYAST ITMVIFVALC VFGVWMLSSN SVIPPQITQG STRAAVAETE RSDVSASSNG NDEPEPTKQE SDEQQAFEDN PGKLPDDAVK
101: SEDEQRKSAK EKSETTSSKT QTQETQQNND DKISEEKEKD NGKENQTVQE SEEGQMKKVV KEFEKEQKQQ RDEDAGTQPK GTQGQEQGQG KEQPDVEQGN
201: KQGQEQDSNT DVTFTDATKQ EQPMETGQGE TSETSKNEEN GQPEEQNSGN EETGQQNEEK TTASEENGKG EKSMKDENGQ QEEHTTAEEE SGNKEEESTS
301: KDENMEQQEE RKDEKKHEQG SEASGFGSGI PKESAESQKS WKSQATESKD EKQRQTSESN TVERIMDGNA WVLCNATAGT DYIPCLDNEE AIMKLRSRRH
401: FEHRERHCPE DPPTCLVPLP EGYKEAIKWP ESRDKIWYHN VPHTKLAEVK GHQNWVKVTG EFLTFPGGGT QFIHGALHYI DFLQQSLKNI AWGKRTRVIL
501: DVGCGVASFG GFLFERDVIA MSLAPKDEHE AQVQFALERK IPAISAVMGS KRLPFPSRVF DLIHCARCRV PWHNEGGMLL LELNRMLRPG GYFVWSATPV
601: YQKLEEDVQI WKEMSALTKS LCWELVTINK DKLNGIGAAI YQKPATNECY EKRKHNKPPL CKNNDDANAA WYVPLQACMH KVPTNVVERG SKWPVNWPRR
701: LQTPPYWLNS SQMGIYGKPA PRDFTTDYEH WKHVVSKVYM NEIGISWSNV RNVMDMRAVY GGFAAALKDL QVWVMNVVNI NSPDTLPIIY ERGLFGIYHD
801: WCESFSTYPR SYDLLHADHL FSKLRTRCNL VPVMAEVDRI VRPGGKLIVR DESNVIREVE NMLKSLHWDV HLTFSKHQEG ILSAQKGFWR PETSQ

Arabidopsis Description

Probable methyltransferase PMT27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD39]
SUBAcon: [extracellular,vacuole,mitochondrion,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.