Factsheet for Solyc08g013740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 2
mitochondrion 2
endoplasmic reticulum 1
cytosol 2

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014851	Potato	cytosol	95.09	96.15
GSMUA_Achr9P19890_001	Banana	cytosol	53.57	75.11
CDX85977	Canola	cytosol	56.74	74.12
VIT_02s0025g03200.t01	Wine grape	cytosol	74.17	74.05
KRH60099	Soybean	cytosol	73.06	74.0
GSMUA_Achr4P24710_001	Banana	cytosol	59.9	73.97
CDX93797	Canola	cytosol	56.42	73.71
KRH41379	Soybean	cytosol	73.06	73.29
GSMUA_Achr4P29040_001	Banana	cytosol, golgi, mitochondrion, peroxisome	69.57	72.32
CDX99540	Canola	cytosol	59.27	69.65
CDX99539	Canola	cytosol	68.46	69.12
EER89033	Sorghum	cytosol	67.83	69.03
AT1G33170.1	Thale cress	cytosol	69.89	69.01
Os06t0103900-01	Rice	cytosol, golgi, mitochondrion, plastid	68.94	68.94
Bra037916.1-P	Field mustard	cytosol	68.15	68.8
CDX84046	Canola	cytosol	66.56	68.63
CDX94256	Canola	cytosol	67.19	68.5
CDY25257	Canola	cytosol	67.04	68.23
Bra033172.1-P	Field mustard	cytosol	67.04	68.23
AT4G10440.1	Thale cress	cytosol, endoplasmic reticulum, mitochondrion, nucleus	68.3	68.09
Zm00001d035876_P002	Maize	cytosol	66.88	68.06
GSMUA_Achr1P11480_001	Banana	cytosol	66.24	67.86
CDY44966	Canola	cytosol	66.56	67.74
TraesCS4A01G458400.1	Wheat	endoplasmic reticulum, golgi	67.51	67.73
Bra041005.1-P	Field mustard	cytosol	68.3	67.55
TraesCS7A01G031100.1	Wheat	endoplasmic reticulum, golgi	67.19	67.41
TraesCS7D01G027500.1	Wheat	endoplasmic reticulum, golgi	66.88	67.09
Os10t0510400-01	Rice	golgi, plasma membrane	67.04	66.72
Bra035476.1-P	Field mustard	cytosol	67.67	66.61
EER93951	Sorghum	peroxisome	67.19	66.56
GSMUA_Achr1P04180_001	Banana	cytosol	63.55	66.28
CDY70936	Canola	cytosol	19.02	65.57
TraesCS6B01G029000.1	Wheat	cytosol	64.18	64.18
TraesCS6D01G025000.1	Wheat	cytosol	64.18	64.18
TraesCS6A01G021300.1	Wheat	cytosol	63.87	63.87
Zm00001d032476_P001	Maize	cytosol, endoplasmic reticulum, mitochondrion, peroxisome	48.65	63.43
HORVU7Hr1G003860.2	Barley	plasma membrane	67.35	60.03
Solyc01g009600.2.1	Tomato	plastid	57.84	57.57
Solyc03g026120.2.1	Tomato	plastid	58.95	57.23
Solyc03g116150.2.1	Tomato	nucleus	52.61	56.85
Solyc01g091690.2.1	Tomato	plastid	57.21	56.76
Solyc06g035790.2.1	Tomato	plastid	58.0	56.22
HORVU6Hr1G003900.3	Barley	cytosol	65.29	55.45
Solyc08g077240.2.1	Tomato	nucleus	54.04	55.36
Solyc06g069870.2.1	Tomato	endoplasmic reticulum	53.72	55.12
Solyc05g007490.2.1	Tomato	nucleus, plastid, unclear	52.93	54.58
Solyc01g010870.2.1	Tomato	nucleus, unclear	51.51	53.54
Solyc08g005490.2.1	Tomato	nucleus, unclear	41.84	44.22
Solyc08g075870.2.1	Tomato	nucleus, unclear	40.41	42.71
Solyc01g091640.2.1	Tomato	nucleus	38.03	40.07
Solyc02g067890.2.1	Tomato	nucleus	37.72	39.02
Solyc03g005600.2.1	Tomato	nucleus, unclear	37.56	38.23
Solyc09g090190.2.1	Tomato	nucleus	37.4	38.19
Solyc10g079450.1.1	Tomato	plasma membrane	32.96	34.04
Solyc05g052970.2.1	Tomato	endoplasmic reticulum	34.55	32.15
Solyc06g051000.2.1	Tomato	plastid	32.01	31.46
Solyc04g058180.2.1	Tomato	plastid	31.85	31.11
Solyc04g063230.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	36.77	30.21
Solyc05g056580.2.1	Tomato	golgi	35.02	27.18
Solyc05g052500.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	33.44	27.05
Solyc02g084670.2.1	Tomato	unclear	35.18	25.14
Solyc04g080360.2.1	Tomato	nucleus	29.79	24.16

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0032259	UniProt:K4CJ09	PFAM:PF03141
PANTHER:PTHR10108	PANTHER:PTHR10108:SF1058	InterPro:Put_SAM_MeTrfase	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	EnsemblPlantsGene:Solyc08g013740.2
EnsemblPlants:Solyc08g013740.2.1	TMHMM:TMhelix	UniParc:UPI000276AE96	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:3205515..3208293

Molecular Weight (calculated)

72009.4 Da

IEP (calculated)

8.610

GRAVY (calculated)

-0.421

Length

631 amino acids

Sequence
(BLAST)

001: MAKDHGGSPK LYQLESKRKR VTWIVGVSGL CIFFYILGAW QNNGRRPTSS AEVYTKVGCD HDKSSSSSSS ISSSTIASSV VPMDFESHHQ LVVNNTKSLE
101: NFPPCEMLYS EYTPCQEPQR GRKFDRNMLK YRERHCPNKE EKEALRCLIP APPNYKIPFK WPQSKDYAWF ANIPHKELSI EKAVQNWVQV EGDRLRFPGG
201: GTMFPHGADA YIDDISALVP LTTGTIRTAI DTGCGVASWG AYLLRRDIIA MSFAPRDTHE AQVWFALERG VPAMIGVMGS QRLPYPARAF DMAHCSRCLI
301: PWYKYDGLYL IEVDRVLRPG GYWILSGPPI RWKMYWRGWE RSQEDLKKEQ DSIEETARQL CWKKVIEKGD LSVWQKPLNH NKCIKNKKPL MCKSRDKADA
401: AWYQDMEACI TPLPEVTNSN EVAGGALEKW PERAFAIPPR ISTGSVPSIT VEKFKEDNKV WSERVSYYKR LIGLLPQGRY RNVMDANAYL GGFAAALAKH
501: PVWVMNVVPA KIEPDTLGII YERGFIGTYN DWCEAFSTYP RTYDLIHAGG LISLYQDRCD ITYILLEMDR ILRPEGTVIF RDGVEALVKI KSIADGMRWQ
601: SRIVDHESGP FNPEKILIAV KTYWTGEPKR E

Best Arabidopsis Sequence Match ( AT1G33170.1 )
(BLAST)

001: MAKENSSHSL AEAKRKRLTW ILCVSGLCIL SYVLGSWQTN TVPTSSSEAY SRMGCDETST TTRAQTTQTQ TNPSSDDTSS SLSSSEPVEL DFESHHKLEL
101: KITNQTVKYF EPCDMSLSEY TPCEDRERGR RFDRNMMKYR ERHCPSKDEL LYCLIPPPPN YKIPFKWPQS RDYAWYDNIP HKELSIEKAI QNWIQVEGER
201: FRFPGGGTMF PRGADAYIDD IARLIPLTDG AIRTAIDTGC GVASFGAYLL KRDIVAMSFA PRDTHEAQVQ FALERGVPAI IGIMGSRRLP YPARAFDLAH
301: CSRCLIPWFQ NDGLYLTEVD RVLRPGGYWI LSGPPINWKK YWKGWERSQE DLKQEQDSIE DAARSLCWKK VTEKGDLSIW QKPINHVECN KLKRVHKTPP
401: LCSKSDLPDF AWYKDLESCV TPLPEANSSD EFAGGALEDW PNRAFAVPPR IIGGTIPDIN AEKFREDNEV WKERISYYKQ IMPELSRGRF RNIMDMNAYL
501: GGFAAAMMKY PSWVMNVVPV DAEKQTLGVI FERGFIGTYQ DWCEGFSTYP RTYDLIHAGG LFSIYENRCD VTLILLEMDR ILRPEGTVVF RDTVEMLTKI
601: QSITNGMRWK SRILDHERGP FNPEKILLAV KSYWTGPSS

Arabidopsis Description

Probable methyltransferase PMT18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C884]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.