Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • endoplasmic reticulum 4
  • extracellular 3
  • vacuole 3
  • plasma membrane 3
  • golgi 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:golgi
 nucleus: 25464976
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400044353 Potato endoplasmic reticulum, golgi 98.54 98.54
Solyc03g005600.2.1 Tomato nucleus, unclear 88.35 88.06
VIT_05s0049g01180.t01 Wine grape endoplasmic reticulum, golgi 82.36 83.17
KRG92410 Soybean endoplasmic reticulum, golgi 82.2 81.94
KRH34393 Soybean endoplasmic reticulum 81.23 80.84
KRH69085 Soybean endoplasmic reticulum, golgi 81.07 80.16
KRH31698 Soybean endoplasmic reticulum 80.91 80.0
AT4G14360.2 Thale cress endoplasmic reticulum, golgi 78.64 79.93
CDX92981 Canola endoplasmic reticulum, golgi 76.05 77.56
Bra001909.1-P Field mustard endoplasmic reticulum, golgi 76.05 77.56
CDY68608 Canola endoplasmic reticulum, golgi, vacuole 76.7 77.32
CDX94861 Canola endoplasmic reticulum, golgi 75.4 77.28
AT3G23300.1 Thale cress endoplasmic reticulum, golgi, vacuole 76.21 77.09
Bra014936.1-P Field mustard endoplasmic reticulum, golgi, vacuole 76.38 77.0
CDX85084 Canola endoplasmic reticulum, golgi, vacuole 76.05 76.92
GSMUA_Achr6P36560_001 Banana endoplasmic reticulum, golgi, vacuole 76.86 76.61
GSMUA_Achr1P20520_001 Banana endoplasmic reticulum, golgi, vacuole 76.54 76.17
GSMUA_Achr5P21350_001 Banana endoplasmic reticulum 74.6 74.24
Os10t0477100-01 Rice golgi 73.95 74.07
Zm00001d032703_P006 Maize endoplasmic reticulum, golgi, vacuole 72.49 73.56
OQU91634 Sorghum endoplasmic reticulum, golgi 72.82 73.05
TraesCS1D01G153300.1 Wheat endoplasmic reticulum, golgi 72.33 72.56
TraesCS1B01G170600.2 Wheat endoplasmic reticulum, golgi 72.17 72.4
TraesCS1A01G154400.2 Wheat golgi 70.87 69.63
Zm00001d014036_P002 Maize endoplasmic reticulum 72.17 68.2
Solyc02g067890.2.1 Tomato nucleus 60.52 61.31
Solyc10g079450.1.1 Tomato plasma membrane 41.75 42.23
Solyc01g010870.2.1 Tomato nucleus, unclear 38.03 38.72
Solyc06g069870.2.1 Tomato endoplasmic reticulum 38.51 38.7
Solyc03g116150.2.1 Tomato nucleus 36.25 38.36
Solyc01g091690.2.1 Tomato plastid 39.0 37.89
Solyc05g007490.2.1 Tomato nucleus, plastid, unclear 37.22 37.58
Solyc08g013740.2.1 Tomato unclear 38.19 37.4
Solyc06g035790.2.1 Tomato plastid 39.32 37.33
Solyc01g009600.2.1 Tomato plastid 38.19 37.22
Solyc08g075870.2.1 Tomato nucleus, unclear 35.92 37.19
Solyc08g077240.2.1 Tomato nucleus 36.89 37.01
Solyc05g052970.2.1 Tomato endoplasmic reticulum 40.13 36.58
Solyc03g026120.2.1 Tomato plastid 38.35 36.46
Solyc08g005490.2.1 Tomato nucleus, unclear 35.11 36.35
Solyc01g091640.2.1 Tomato nucleus 35.11 36.23
Solyc04g058180.2.1 Tomato plastid 37.54 35.91
Solyc06g051000.2.1 Tomato plastid 35.6 34.27
Solyc04g063230.2.1 Tomato cytosol, endoplasmic reticulum, nucleus 41.26 33.2
Solyc05g056580.2.1 Tomato golgi 40.13 30.5
Solyc05g052500.2.1 Tomato endoplasmic reticulum, golgi, plasma membrane 35.92 28.46
Solyc02g084670.2.1 Tomato unclear 39.64 27.75
Solyc04g080360.2.1 Tomato nucleus 32.2 25.58
Protein Annotations
Gene3D:3.40.50.150MapMan:35.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0008757
GO:GO:0016020GO:GO:0016021GO:GO:0016740GO:GO:0032259UniProt:K4CW45PFAM:PF03141
PANTHER:PTHR10108PANTHER:PTHR10108:SF704InterPro:Put_SAM_MeTrfaseInterPro:SAM-dependent_MTasesSUPFAM:SSF53335EnsemblPlantsGene:Solyc09g090190.2
EnsemblPlants:Solyc09g090190.2.1TMHMM:TMhelixUniParc:UPI000276CB67SEG:seg::
Description
No Description!
Coordinates
chr9:+:69741894..69745928
Molecular Weight (calculated)
70505.2 Da
IEP (calculated)
6.511
GRAVY (calculated)
-0.404
Length
618 amino acids
Sequence
(BLAST)
001: MMRGRSDGAQ KKRLLTSVAV VALFVVVLYF YFGSKSNGES ALEYGSRSLR KLGSSYLGGD DDSDLSSKQD EKFGLEDGED GIVSKSFPVC DDRHSELIPC
101: LDRHLIYQMR LKLDLTLMEH YERHCPLPER RFNCLIPPPA GYKVPIKWPR SRDEVWKANI PHTHLAHEKS DQNWMVVKGE KIIFPGGGTH FHYGADKYIA
201: LIANMLKFPN NNLNNGGRIR TVFDVGCGVA SFGGYLLSSD IIAMSLAPND VHQNQIQFAL ERGIPAYLGV LGTKRLPYPS RSFEFAHCSR CRIDWLQRDG
301: ILLLELDRVL RPGGYFAYSS PEAYAQDEED LRIWKQMSTL VERMCWRIAE KKNQTVIWVK PLNNDCYMER PAGTQPPLCR SNDDPDAVWG VNMEACITPY
401: SDHDHKVGGS GLAPWPARLS TPPPRLADFG YSSEMFEKDM ELWQRRVEHY WNILSSKISS DTLRNIMDMK ANMGSFAAAL KDKDVWVMNV VPKDGPNTLK
501: IVYDRGLIGT THDWCEAFST YPRTYDLLHA WNIFSDIEKK GCSGEDLLLE IDRIVRPSGF VIFRDKQHVI DFVKKYLSPL HWEAVADPTP DQDQEGDEIV
601: FIIQKKLWLT SESIRDTE
Best Arabidopsis Sequence Match ( AT1G04430.2 )
(BLAST)
001: MMRGRSDGGL KKRLIASVCV VALFVCFLFM YYGSSSQGAS ALEYGRSLRK LGSSYLSGDD DNGDTKQDDS VANAEDSLVV AKSFPVCDDR HSEIIPCLDR
101: NFIYQMRLKL DLSLMEHYER HCPPPERRFN CLIPPPSGYK VPIKWPKSRD EVWKANIPHT HLAKEKSDQN WMVEKGEKIS FPGGGTHFHY GADKYIASIA
201: NMLNFSNDVL NDEGRLRTVL DVGCGVASFG AYLLASDIMT MSLAPNDVHQ NQIQFALERG IPAYLGVLGT KRLPYPSRSF EFAHCSRCRI DWLQRDGLLL
301: LELDRVLRPG GYFAYSSPEA YAQDEENLKI WKEMSALVER MCWRIAVKRN QTVVWQKPLS NDCYLEREPG TQPPLCRSDA DPDAVAGVSM EACITPYSKH
401: DHKTKGSGLA PWPARLTSSP PRLADFGYST DMFEKDTELW KQQVDSYWNL MSSKVKSNTV RNIMDMKAHM GSFAAALKDK DVWVMNVVSP DGPNTLKLIY
501: DRGLIGTNHN WCEAFSTYPR TYDLLHAWSI FSDIKSKGCS AEDLLIEMDR ILRPTGFVII RDKQSVVESI KKYLQALHWE TVASEKVNTS SELDQDSEDG
601: ENNVVFIVQK KLWLTSESLR DSE
Arabidopsis Description
Probable methyltransferase PMT8 [Source:UniProtKB/Swiss-Prot;Acc:Q940J9]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.