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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, nucleus

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, unclear
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:golgi
 unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400079286 Potato cytosol 97.49 97.49
Solyc08g005490.2.1 Tomato nucleus, unclear 82.58 82.58
VIT_02s0033g01120.t01 Wine grape cytosol 80.4 80.0
CDY09274 Canola cytosol, endoplasmic reticulum, golgi 78.73 79.53
CDX76494 Canola endoplasmic reticulum, golgi 77.39 78.84
Bra020975.1-P Field mustard endoplasmic reticulum, golgi 78.22 78.36
AT4G19120.2 Thale cress cytosol, endoplasmic reticulum, golgi 78.22 77.83
Bra012557.1-P Field mustard cytosol, golgi, nucleus 77.89 77.37
KRH76381 Soybean cytosol, golgi, plasma membrane 76.88 76.88
KRH39668 Soybean endoplasmic reticulum 75.88 75.88
KRH07708 Soybean cytosol 75.88 75.75
GSMUA_Achr4P27550_001 Banana extracellular, plasma membrane 73.2 75.74
KRH07206 Soybean cytosol, golgi, plasma membrane 75.21 75.08
GSMUA_Achr11P... Banana endoplasmic reticulum, golgi 72.19 74.7
Os04t0218400-00 Rice cytosol 18.09 73.97
Bra023213.1-P Field mustard endoplasmic reticulum, golgi 74.04 73.67
CDY12278 Canola endoplasmic reticulum, golgi 74.04 73.67
AT1G31850.3 Thale cress cytosol, endoplasmic reticulum, golgi 73.87 73.13
CDY22567 Canola endoplasmic reticulum, golgi 73.37 73.0
CDY47695 Canola cytosol, endoplasmic reticulum, golgi 73.37 72.64
CDY67792 Canola cytosol, endoplasmic reticulum, golgi 73.37 72.64
KRH07208 Soybean cytosol 73.37 72.52
CDY47694 Canola cytosol, endoplasmic reticulum, golgi 72.86 72.14
Bra033872.1-P Field mustard endoplasmic reticulum, golgi, mitochondrion, plasma membrane 72.19 71.48
GSMUA_Achr4P18470_001 Banana cytosol, extracellular, mitochondrion, plasma membrane 71.19 71.07
CDY01583 Canola endoplasmic reticulum, plasma membrane, vacuole 78.06 70.93
CDX98606 Canola vacuole 77.72 69.88
CDY61681 Canola endoplasmic reticulum, golgi 77.55 67.89
EER94413 Sorghum plasma membrane 68.84 67.05
HORVU1Hr1G051470.3 Barley endoplasmic reticulum 68.17 66.61
TraesCS1D01G202300.2 Wheat endoplasmic reticulum 67.84 66.61
CDX78919 Canola cytosol, golgi 77.89 65.77
Bra013374.1-P Field mustard cytosol, golgi 77.89 65.77
TraesCS1A01G198600.1 Wheat golgi 68.01 64.65
TraesCS1B01G213600.1 Wheat endoplasmic reticulum 67.84 63.58
GSMUA_Achr5P18010_001 Banana nucleus 72.36 57.75
Solyc03g026120.2.1 Tomato plastid 45.23 41.54
Solyc01g009600.2.1 Tomato plastid 44.05 41.48
Solyc01g091640.2.1 Tomato nucleus 41.37 41.24
Solyc06g035790.2.1 Tomato plastid 44.72 41.01
Solyc01g091690.2.1 Tomato plastid 43.38 40.72
Solyc08g013740.2.1 Tomato unclear 42.71 40.41
Solyc03g116150.2.1 Tomato nucleus 39.53 40.41
Solyc06g069870.2.1 Tomato endoplasmic reticulum 41.21 40.0
Solyc08g077240.2.1 Tomato nucleus 41.04 39.77
Solyc05g007490.2.1 Tomato nucleus, plastid, unclear 40.7 39.71
Solyc01g010870.2.1 Tomato nucleus, unclear 40.37 39.7
Solyc09g090190.2.1 Tomato nucleus 37.19 35.92
Solyc02g067890.2.1 Tomato nucleus 36.68 35.9
Solyc03g005600.2.1 Tomato nucleus, unclear 36.85 35.48
Solyc10g079450.1.1 Tomato plasma membrane 35.01 34.21
Solyc06g051000.2.1 Tomato plastid 36.68 34.11
Solyc05g052970.2.1 Tomato endoplasmic reticulum 37.86 33.33
Solyc04g058180.2.1 Tomato plastid 35.01 32.35
Solyc04g063230.2.1 Tomato cytosol, endoplasmic reticulum, nucleus 36.18 28.12
Solyc05g052500.2.1 Tomato endoplasmic reticulum, golgi, plasma membrane 36.52 27.95
Solyc05g056580.2.1 Tomato golgi 37.35 27.43
Solyc02g084670.2.1 Tomato unclear 37.52 25.37
Solyc04g080360.2.1 Tomato nucleus 31.99 24.55
Protein Annotations
Gene3D:3.40.50.150MapMan:35.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0008757
GO:GO:0016020GO:GO:0016021GO:GO:0016740GO:GO:0032259UniProt:K4CMV4PFAM:PF03141
PANTHER:PTHR10108PANTHER:PTHR10108:SF984InterPro:Put_SAM_MeTrfaseInterPro:SAM-dependent_MTasesSUPFAM:SSF53335EnsemblPlantsGene:Solyc08g075870.2
EnsemblPlants:Solyc08g075870.2.1TMHMM:TMhelixUniParc:UPI000276BAC4:::
Description
No Description!
Coordinates
chr8:+:59961248..59964726
Molecular Weight (calculated)
68392.6 Da
IEP (calculated)
7.846
GRAVY (calculated)
-0.507
Length
597 amino acids
Sequence
(BLAST)
001: MKHKDGKPYP PNKNSKKIQV TLIVVVLCGF SFYLGGIFCS EKDTYATKEV NREDETSIGN SAGSLQTRGN SFTECSADYQ DYTPCTDPRR WKKYGLHRLT
101: FMERHCPPNF ERKECLVPPP DGYKVPIRWP KSKNECWYRN VPYDWINKQK SNQHWLVKEG EKFIFPGGGT MFPNGVGKYV DLMEDLIPEM KDGTVRTAID
201: TGCGVASWGG DLLDRGILTV SLAPRDNHEA QVQFALERGI PAVLGIISTQ RLPFPSNSFD MAHCSRCLIP WTEFGGVYLL EVHRILRPGG FWVLSGPPVN
301: YENRWRGWNT TIEEQRSDYE KLQDLLTSMC FKLYNKKDDI AVWQKLTDNS CYKKLDNSDS YPPKCDDGTE PDSAWYTPLR PCVVVPPATR KVKLNALAKW
401: PERLHVAPER VSDIRGGSEG AFKHDDSKWK VRAKHYKKLL PAIGSEKVRN VMDMNTLYGG FAAALVEDPL WVMNVVSSYA ANTLPVVFDR GLIGTFHDWC
501: EAFSTYPRTY DLLHVDNLFT AESHRCEMKY VMLEMDRILR PNGYAIIRES SYFIDVVAPM AKGMRWSCHE EETEYSGQNE KILICQKKLW YSKETSL
Best Arabidopsis Sequence Match ( AT4G19120.1 )
(BLAST)
001: MKYKDEKYEK AEKGSRILPK TVLLILLCGL SFYLGGLYCG KNIIEVSDVA KAESSSLDVD DSLQVKSVSF SECSSDYQDY TPCTDPRKWK KYGTHRLTFM
101: ERHCPPVFDR KQCLVPPPDG YKPPIRWPKS KDECWYRNVP YDWINKQKSN QNWLRKEGEK FIFPGGGTMF PHGVSAYVDL MQDLIPEMKD GTIRTAIDTG
201: CGVASWGGDL LDRGILTVSL APRDNHEAQV QFALERGIPA ILGIISTQRL PFPSNSFDMA HCSRCLIPWT EFGGVYLLEV HRILRPGGFW VLSGPPVNYE
301: NRWKGWDTTI EEQRSNYEKL QELLSSMCFK MYAKKDDIAV WQKSPDNLCY NKLSNDPDAY PPKCDDSLEP DSAWYTPLRP CVVVPSPKLK KTDLESTPKW
401: PERLHTTPER ISDVPGGNGN VFKHDDSKWK TRAKHYKKLL PAIGSDKIRN VMDMNTAYGG LAAALVNDPL WVMNVVSSYA ANTLPVVFDR GLIGTYHDWC
501: EAFSTYPRTY DLLHVDGLFT SESQRCDMKY VMLEMDRILR PSGYAIIRES SYFADSIASV AKELRWSCRK EQTESASANE KLLICQKKLW YSSNASSETN
Arabidopsis Description
ERD3Probable methyltransferase PMT21 [Source:UniProtKB/Swiss-Prot;Acc:Q94II3]
SUBAcon: [endoplasmic reticulum,golgi,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.