Factsheet for VIT_02s0033g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047515	Potato	cytosol, golgi, plasma membrane	81.5	81.91
Solyc08g005490.2.1	Tomato	nucleus, unclear	81.0	81.41
Solyc08g075870.2.1	Tomato	nucleus, unclear	80.0	80.4
PGSC0003DMT400079286	Potato	cytosol	79.67	80.07
AT4G19120.2	Thale cress	cytosol, endoplasmic reticulum, golgi	78.67	78.67
CDY09274	Canola	cytosol, endoplasmic reticulum, golgi	76.83	78.0
Bra012557.1-P	Field mustard	cytosol, golgi, nucleus	77.67	77.54
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	74.5	77.47
CDX76494	Canola	endoplasmic reticulum, golgi	75.5	77.3
GSMUA_Achr4P27550_001	Banana	extracellular, plasma membrane	74.33	77.3
Bra020975.1-P	Field mustard	endoplasmic reticulum, golgi	76.33	76.85
Os04t0218400-00	Rice	cytosol	18.67	76.71
GSMUA_Achr4P18470_001	Banana	cytosol, extracellular, mitochondrion, plasma membrane	73.67	73.91
CDY01583	Canola	endoplasmic reticulum, plasma membrane, vacuole	77.5	70.78
CDX98606	Canola	vacuole	77.67	70.18
CDY61681	Canola	endoplasmic reticulum, golgi	76.67	67.45
EER94413	Sorghum	plasma membrane	68.83	67.37
TraesCS1D01G202300.2	Wheat	endoplasmic reticulum	67.67	66.78
HORVU1Hr1G051470.3	Barley	endoplasmic reticulum	68.0	66.78
CDX78919	Canola	cytosol, golgi	77.0	65.35
Bra013374.1-P	Field mustard	cytosol, golgi	77.0	65.35
TraesCS1A01G198600.1	Wheat	golgi	67.5	64.49
TraesCS1B01G213600.1	Wheat	endoplasmic reticulum	67.33	63.42
GSMUA_Achr5P18010_001	Banana	nucleus	74.33	59.63
VIT_15s0048g01940.t01	Wine grape	mitochondrion	44.83	42.56
VIT_02s0025g03200.t01	Wine grape	cytosol	44.67	42.41
VIT_17s0000g06050.t01	Wine grape	cytosol	42.67	41.97
VIT_04s0023g02790.t01	Wine grape	cytosol	35.17	41.7
VIT_02s0012g00580.t01	Wine grape	endoplasmic reticulum, golgi	42.33	41.57
VIT_16s0100g00570.t01	Wine grape	mitochondrion	44.67	40.85
VIT_05s0124g00530.t01	Wine grape	endoplasmic reticulum, golgi, mitochondrion, vacuole	41.83	40.81
VIT_01s0026g02340.t01	Wine grape	golgi	42.67	40.25
VIT_15s0048g01990.t01	Wine grape	mitochondrion	39.33	39.53
VIT_07s0005g03630.t01	Wine grape	endoplasmic reticulum, golgi	37.33	36.13
VIT_05s0049g01180.t01	Wine grape	endoplasmic reticulum, golgi	36.17	35.46
VIT_13s0067g01690.t01	Wine grape	endoplasmic reticulum, golgi	35.5	35.15
VIT_08s0007g05750.t01	Wine grape	endoplasmic reticulum, plasma membrane	34.33	34.28
VIT_18s0001g01600.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	36.5	32.88
VIT_13s0019g02250.t01	Wine grape	golgi	37.33	32.65
VIT_04s0044g01670.t01	Wine grape	cytosol	36.83	26.79
VIT_18s0001g12470.t01	Wine grape	mitochondrion	30.67	25.41
VIT_18s0001g01270.t01	Wine grape	plasma membrane	36.5	24.94

Protein Annotations

EntrezGene:100251016	wikigene:100251016	Gene3D:3.40.50.150	MapMan:35.1	ProteinID:CCB60355	ProteinID:CCB60355.1
UniProt:F6I089	EMBL:FN596505	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0032259	EntrezGene:LOC100251016	wikigene:LOC100251016
PFAM:PF03141	PANTHER:PTHR10108	PANTHER:PTHR10108:SF984	InterPro:Put_SAM_MeTrfase	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
TIGR:TC63251	TMHMM:TMhelix	UniParc:UPI00015CD3AB	ArrayExpress:VIT_02s0033g01120	EnsemblPlantsGene:VIT_02s0033g01120	EnsemblPlants:VIT_02s0033g01120.t01
unigene:Vvi.3210	RefSeq:XP_002265127	RefSeq:XP_002265127.1	RefSeq:XP_019080880.1	:	:

Description

No Description!

Coordinates

chr2:+:16403096..16408471

Molecular Weight (calculated)

68727.4 Da

IEP (calculated)

8.484

GRAVY (calculated)

-0.492

Length

600 amino acids

Sequence
(BLAST)

001: MKHKDGKPGS QPDKSSRVVP MSIMFVVLCG FSFYLGGIFC SEKERFVTKE VEKAVQSPKE SSSSPLQIKS VAFPECSREY QDYTPCTDPR KWKKYGLHRL
101: TFMERHCPPV FERKECLIPP PDGYKPPIKW PKSRNECWYR NVPYDWINKQ KSNQNWLRKE GEKFLFPGGG TMFPRGVGAY VDLMQDLIPE MLDGTVRTAI
201: DTGCGVASWG GDLLDRGILT MSLAPRDNHE AQVQFALERG IPAILGIIST QRLPFPSNSF DMAHCSRCLI PWTEFGGIYL LEVHRILRPG GFWVLSGPPV
301: NYENRWRGWN TTVEDQKSDY EKLTELLTSM CFKLYNKKDD IAVWQKSSDN NCYQQLSSPD VYPPKCDDGT EPDAAWYTPL RPCVVVPEPK YKKLGLKSVP
401: KWPERLNVAP DRISAIHGGS ASTFKHDDSK WKERLKHYKK LLPAIGTDKI RNVMDMNTAY GGFAASMVND PLWVMNVVSS YAANTLPVVF DRGLIGTYHD
501: WCEAFSTYPR TYDLLHLDGL FTAESHRCDM KYVLLEMDRI LRPNGYAIIR ESSYFVDAVA TIAKGMRWGC RKEETEYGIE KEKILICQKK IWYSSNQNSR

Best Arabidopsis Sequence Match ( AT1G31850.1 )
(BLAST)

001: MKSGKQSSQP EKGTSRILSL TVLFIAFCGF SFYLGGIFCS ERDKIVAKDV TRTTTKAVAS PKEPTATPIQ IKSVSFPECG SEFQDYTPCT DPKRWKKYGV
101: HRLSFLERHC PPVYEKNECL IPPPDGYKPP IRWPKSREQC WYRNVPYDWI NKQKSNQHWL KKEGDKFHFP GGGTMFPRGV SHYVDLMQDL IPEMKDGTVR
201: TAIDTGCGVA SWGGDLLDRG ILSLSLAPRD NHEAQVQFAL ERGIPAILGI ISTQRLPFPS NAFDMAHCSR CLIPWTEFGG IYLLEIHRIV RPGGFWVLSG
301: PPVNYNRRWR GWNTTMEDQK SDYNKLQSLL TSMCFKKYAQ KDDIAVWQKL SDKSCYDKIA KNMEAYPPKC DDSIEPDSAW YTPLRPCVVA PTPKVKKSGL
401: GSIPKWPERL HVAPERIGDV HGGSANSLKH DDGKWKNRVK HYKKVLPALG TDKIRNVMDM NTVYGGFSAA LIEDPIWVMN VVSSYSANSL PVVFDRGLIG
501: TYHDWCEAFS TYPRTYDLLH LDSLFTLESH RCEMKYILLE MDRILRPSGY VIIRESSYFM DAITTLAKGI RWSCRREETE YAVKSEKILV CQKKLWFSSN
601: QTS

Arabidopsis Description

Probable methyltransferase PMT20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S7]
SUBAcon: [endoplasmic reticulum,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.