Factsheet for VIT_18s0001g01600.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03780_001	Banana	cytosol	59.31	70.28
GSMUA_Achr5P28990_001	Banana	cytosol	58.56	70.02
CDX87530	Canola	cytosol, golgi, peroxisome, plastid	66.37	68.1
Bra015681.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	65.77	67.59
CDX88354	Canola	cytosol, endoplasmic reticulum, golgi	65.62	67.44
AT1G77260.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	65.92	67.02
PGSC0003DMT400059283	Potato	cytosol	55.71	66.85
KRH16455	Soybean	endoplasmic reticulum, golgi	65.77	66.36
KRH18054	Soybean	endoplasmic reticulum, golgi	65.47	65.76
VIT_13s0019g02250.t01	Wine grape	golgi	65.62	63.7
Os01t0846600-01	Rice	mitochondrion	65.17	63.17
Zm00001d012400_P007	Maize	plasma membrane	60.81	62.5
EES03874	Sorghum	mitochondrion	63.81	61.77
Solyc04g058180.2.1	Tomato	plastid	58.71	60.53
Zm00001d042883_P001	Maize	mitochondrion, plastid	62.91	60.29
TraesCS3D01G356400.1	Wheat	endoplasmic reticulum	62.76	59.89
TraesCS3A01G362600.1	Wheat	golgi	62.76	59.54
TraesCS3B01G395100.1	Wheat	plastid	62.91	59.26
HORVU3Hr1G085900.1	Barley	golgi, plastid	62.46	55.62
VIT_04s0023g02790.t01	Wine grape	cytosol	35.44	46.64
VIT_13s0067g01690.t01	Wine grape	endoplasmic reticulum, golgi	37.54	41.25
VIT_05s0049g01180.t01	Wine grape	endoplasmic reticulum, golgi	37.69	41.01
VIT_07s0005g03630.t01	Wine grape	endoplasmic reticulum, golgi	37.09	39.84
VIT_08s0007g05750.t01	Wine grape	endoplasmic reticulum, plasma membrane	35.44	39.27
VIT_02s0012g00580.t01	Wine grape	endoplasmic reticulum, golgi	35.14	38.3
VIT_17s0000g06050.t01	Wine grape	cytosol	34.68	37.87
VIT_05s0124g00530.t01	Wine grape	endoplasmic reticulum, golgi, mitochondrion, vacuole	34.23	37.07
VIT_01s0026g02340.t01	Wine grape	golgi	35.14	36.79
VIT_02s0033g01120.t01	Wine grape	cytosol	32.88	36.5
VIT_16s0100g00570.t01	Wine grape	mitochondrion	35.89	36.43
VIT_15s0048g01990.t01	Wine grape	mitochondrion	32.28	36.01
VIT_02s0025g03200.t01	Wine grape	cytosol	33.93	35.76
VIT_15s0048g01940.t01	Wine grape	mitochondrion	33.03	34.81
VIT_18s0001g12470.t01	Wine grape	mitochondrion	33.33	30.66
VIT_04s0044g01670.t01	Wine grape	cytosol	37.69	30.42
VIT_18s0001g01270.t01	Wine grape	plasma membrane	38.44	29.16

Protein Annotations

EntrezGene:100248795	wikigene:100248795	Gene3D:3.40.50.150	MapMan:35.1	ProteinID:CCB45445	ProteinID:CCB45445.1
UniProt:F6H0H3	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757
GO:GO:0016740	GO:GO:0032259	EntrezGene:LOC100248795	wikigene:LOC100248795	PFAM:PF03141	PFscan:PS51257
PANTHER:PTHR10108	PANTHER:PTHR10108:SF979	InterPro:Put_SAM_MeTrfase	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	TIGR:TC68559
UniParc:UPI00015C7D91	ArrayExpress:VIT_18s0001g01600	EnsemblPlantsGene:VIT_18s0001g01600	EnsemblPlants:VIT_18s0001g01600.t01	unigene:Vvi.4606	RefSeq:XP_002285887
RefSeq:XP_002285887.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:2177493..2197513

Molecular Weight (calculated)

75088.7 Da

IEP (calculated)

5.920

GRAVY (calculated)

-0.253

Length

666 amino acids

Sequence
(BLAST)

001: MKDIGPNLNF IKTPAFIKIT AFAIIVLSCF YLGKHYSDGY RQLSFFSTFH SPQTDSIIDV AVGVSPNVGK FSDQNLNLTA PPSIPGSPPK NSKNAPPPAV
101: ERIGIVDEDG AMSVEFEVGE LDPHSVEDLG NLDGEEEKKV GNRDSTVKIE NFRVCEASMQ DYIPCLDNVK EIARLNSTEK GEKYERHCPG KGEGLDCLVP
201: MPQGYKPRIP WPASRDEVWF SNVPHTRLVE DKGGQNWISI KGDKFVFPGG GTQFIHGADQ YLDQISQMVP DIAFGNHTRV VLDIGCGVAS FGAFLLQRNV
301: ITLSIAPKDV HENQIQFALE RGVPAMVAVF ATHRLLYPSQ AFDLIHCSRC RINWTRDDGI LLLEVNRMLR AGGYFAWAAQ PVYKHEGNLQ EQWKEMEDLT
401: IRLCWELVKK EGYIAIWRKP LNNSCYLNRD TGVQPPLCDP NDDPDDVWYV GMKPCITLLP ENGYGANVTA WPARLNDLPE RLQTIEMDAY ISRKEILKAD
501: TKFWHEVIYG YVHAYHWNDS KLRNVMDMRA GFGGFAAALI DFQVDCWVMN VVPVSGFNTL PVIYDRGLIG VRHDWCEPFD TYPRTYDLLH AAGLFSIEQK
601: RCNISNIMLE IDRMLRPGGR VYIRDTVSVV NELHAIAVAM GWASAVHDTS EGPHASWRLL RCDKRF

Best Arabidopsis Sequence Match ( AT1G77260.1 )
(BLAST)

001: MKLSDVGLDV VKTPRLVKLI AFAFLSISTI FLFNHFSDSF SYPSLPFPIS SSSNVTEAIQ TNITSVAAVA PSPPPRPRLK ISPPPLPPTV VRTGIINENG
101: AMSDSFEIGG FDPDSIDELK SATGNSSVEE KESPEVGFQI EKLKLCDKTK IDYIPCLDNE EEIKRLNNTD RGENYERHCP KQSLDCLIPP PDGYKKPIQW
201: PQSRDKIWFN NVPHTRLVED KGGQNWIRRE KDKFVFPGGG TQFIHGADQY LDQISQMIPD ITFGSRTRVA LDIGCGVASF GAFLMQRNTT TLSVAPKDVH
301: ENQIQFALER GVPAMVAVFA TRRLLYPSQS FEMIHCSRCR INWTRDDGIL LLEVNRMLRA GGYFVWAAQP VYKHEDNLQE QWKEMLDLTN RICWELIKKE
401: GYIAVWRKPL NNSCYVSREA GTKPPLCRPD DDPDDVWYVD MKPCITRLPD NGYGANVSTW PARLHDPPER LQSIQMDAYI SRKEIMKAES RFWLEVVESY
501: VRVFRWKEFK LRNVLDMRAG FGGFAAALND LGLDCWVMNI VPVSGFNTLP VIYDRGLQGA MHDWCEPFDT YPRTYDLIHA AFLFSVEKKR CNITNIMLEM
601: DRMLRPGGHV YIRDSLSLMD QLQQVAKAIG WTAGVHDTGE GPHASVRILI CDKRI

Arabidopsis Description

Probable methyltransferase PMT10 [Source:UniProtKB/Swiss-Prot;Acc:Q94KE1]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.