Factsheet for VIT_17s0000g06050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
endoplasmic reticulum 4
extracellular 3
vacuole 3
plasma membrane 3
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

cytosol: 21379583

msms PMID: 21379583 doi

RG Sharathchandra, C Stander, D Jacobson, B Ndimba, MA Vivier

Department of Viticulture and Oenology, Institute for Wine Biotechnology, Stellenbosch University, Stellenbosch, South Africa.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63351	Soybean	endoplasmic reticulum	77.87	78.38
Solyc06g069870.2.1	Tomato	endoplasmic reticulum	78.2	77.56
KRH54546	Soybean	golgi	73.44	77.51
VIT_01s0026g02340.t01	Wine grape	golgi	80.66	77.36
Solyc03g116150.2.1	Tomato	nucleus	73.28	76.54
PGSC0003DMT400050242	Potato	golgi	77.21	76.46
GSMUA_Achr3P20050_001	Banana	endoplasmic reticulum, golgi	73.61	76.1
GSMUA_Achr3P01520_001	Banana	endoplasmic reticulum, golgi	73.28	75.76
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	76.07	75.2
TraesCS5D01G234300.1	Wheat	endoplasmic reticulum, golgi	75.25	74.76
TraesCS5B01G225500.1	Wheat	cytosol, endoplasmic reticulum, golgi	75.08	74.59
HORVU5Hr1G065680.2	Barley	cytosol, endoplasmic reticulum, golgi	74.59	74.1
TraesCS5A01G226900.1	Wheat	golgi	74.59	74.1
EER96732	Sorghum	endoplasmic reticulum, golgi	74.59	73.62
GSMUA_Achr8P16940_001	Banana	endoplasmic reticulum, golgi	42.79	73.11
Zm00001d020461_P001	Maize	plasma membrane	73.28	72.68
HORVU5Hr1G102720.2	Barley	cytosol	60.82	72.6
VIT_02s0012g00580.t01	Wine grape	endoplasmic reticulum, golgi	72.62	72.5
Os09t0415700-01	Rice	golgi	73.11	72.4
Os03t0379100-01	Rice	endoplasmic reticulum, golgi, vacuole	70.33	70.21
TraesCS5D01G429900.1	Wheat	endoplasmic reticulum, golgi, vacuole	69.67	69.44
EER94782	Sorghum	endoplasmic reticulum, golgi, vacuole	68.69	68.69
TraesCS5B01G423200.2	Wheat	cytosol, endoplasmic reticulum, golgi, mitochondrion	69.84	68.6
TraesCS5A01G421600.2	Wheat	endoplasmic reticulum	69.67	68.44
Zm00001d029336_P002	Maize	cytosol	68.85	61.14
Zm00001d047183_P002	Maize	golgi	59.18	57.85
VIT_02s0025g03200.t01	Wine grape	cytosol	56.72	54.75
VIT_16s0100g00570.t01	Wine grape	mitochondrion	56.23	52.29
VIT_15s0048g01940.t01	Wine grape	mitochondrion	53.11	51.27
VIT_05s0124g00530.t01	Wine grape	endoplasmic reticulum, golgi, mitochondrion, vacuole	49.18	48.78
VIT_02s0033g01120.t01	Wine grape	cytosol	41.97	42.67
VIT_15s0048g01990.t01	Wine grape	mitochondrion	39.84	40.7
VIT_04s0023g02790.t01	Wine grape	cytosol	33.28	40.12
VIT_05s0049g01180.t01	Wine grape	endoplasmic reticulum, golgi	37.21	37.09
VIT_07s0005g03630.t01	Wine grape	endoplasmic reticulum, golgi	37.21	36.61
VIT_18s0001g01600.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	37.87	34.68
VIT_08s0007g05750.t01	Wine grape	endoplasmic reticulum, plasma membrane	33.93	34.44
VIT_13s0067g01690.t01	Wine grape	endoplasmic reticulum, golgi	34.1	34.32
VIT_13s0019g02250.t01	Wine grape	golgi	37.7	33.53
VIT_04s0044g01670.t01	Wine grape	cytosol	36.56	27.03
VIT_18s0001g01270.t01	Wine grape	plasma membrane	38.69	26.88
VIT_18s0001g12470.t01	Wine grape	mitochondrion	31.48	26.52

Protein Annotations

EntrezGene:100267238	wikigene:100267238	Gene3D:3.40.50.150	MapMan:35.1	EMBL:AM425900	ProteinID:CAN60192
ProteinID:CAN60192.1	ProteinID:CCB43097	ProteinID:CCB43097.1	UniProt:F6GT88	EMBL:FN594950	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008757	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0032259	EntrezGene:LOC100267238	wikigene:LOC100267238	PFAM:PF03141	PANTHER:PTHR10108	PANTHER:PTHR10108:SF1053
InterPro:Put_SAM_MeTrfase	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	TMHMM:TMhelix	UniParc:UPI000198514F	ArrayExpress:VIT_17s0000g06050
EnsemblPlantsGene:VIT_17s0000g06050	EnsemblPlants:VIT_17s0000g06050.t01	unigene:Vvi.17868	unigene:Vvi.3153	RefSeq:XP_002275852	RefSeq:XP_002275852.1
RefSeq:XP_019082157.1	RefSeq:XP_019082158.1	:	:	:	:

Description

No Description!

Coordinates

chr17:-:6616986..6621517

Molecular Weight (calculated)

68839.1 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.343

Length

610 amino acids

Sequence
(BLAST)

001: MAKKGNAAES KTRSSISIFV VLGLCCFFYI LGAWQRSGFG KGDSIAIEVT KQTDCSILSN LNFETHHKDE AGTIGDQFKP CDAQYIDYTP CQDQDRAMTF
101: PREDMNYRER HCPPEGEKLH CLIPAPKGYA TPFPWPKSRD YVPFANAPYK NLTVEKAVQN WIQYEGNVFR FPGGGTQFPR GADAYIDELA SVIPFENGMV
201: RTALDTGCGV ASWGAYLFKK NVIAMSFAPR DSHVAQVQFA LERGVPAVIG VLGTIKLPYP SGAFDMAHCS RCLIPWGAND GMYMMEVDRV LRPGGYWVLS
301: GPPISWNINY RAWQRPKEDL QEEQSKIEEI AKLLCWEKKY EKGEIAIWRK RINHDSCSEQ DSHVTFCEAT NANDVWYKQM EACVTPYPKT TEADEVAGGV
401: WKPFPERLNA VPFRISSGSI PGVSDETFQE DDKLWKKHVK AYKRTNKIID SGRYRNIMDM NAGLGSFAAA LESPKLWVMN VMPTIAEKDT LGVIYERGLI
501: GIYHDWCEAF STYPRTYDLI HANGVFSLYK NSCSAEDILL EMDRILRPEG AVIFRDQIDV LIKVKKIVGG MRWNTKLVDH EDGPLVSEKI LFAVKQYWVV
601: GENNSTAAPQ

Best Arabidopsis Sequence Match ( AT1G26850.2 )
(BLAST)

001: MALKSSSADG KTRSSVQIFI VFSLCCFFYI LGAWQRSGFG KGDSIALEMT NSGADCNIVP SLNFETHHAG ESSLVGASEA AKVKAFEPCD GRYTDYTPCQ
101: DQRRAMTFPR DSMIYRERHC APENEKLHCL IPAPKGYVTP FSWPKSRDYV PYANAPYKAL TVEKAIQNWI QYEGDVFRFP GGGTQFPQGA DKYIDQLASV
201: IPMENGTVRT ALDTGCGVAS WGAYLWSRNV RAMSFAPRDS HEAQVQFALE RGVPAVIGVL GTIKLPYPTR AFDMAHCSRC LIPWGANDGM YLMEVDRVLR
301: PGGYWILSGP PINWKVNYKA WQRPKEDLQE EQRKIEEAAK LLCWEKKYEH GEIAIWQKRV NDEACRSRQD DPRANFCKTD DTDDVWYKKM EACITPYPET
401: SSSDEVAGGE LQAFPDRLNA VPPRISSGSI SGVTVDAYED DNRQWKKHVK AYKRINSLLD TGRYRNIMDM NAGFGGFAAA LESQKLWVMN VVPTIAEKNR
501: LGVVYERGLI GIYHDWCEAF STYPRTYDLI HANHLFSLYK NKCNADDILL EMDRILRPEG AVIIRDDVDT LIKVKRIIAG MRWDAKLVDH EDGPLVPEKV
601: LIAVKQYWVT NSTSTH

Arabidopsis Description

Probable methyltransferase PMT2 [Source:UniProtKB/Swiss-Prot;Acc:B9DFI7]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.