Factsheet for Solyc02g067890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 1
endoplasmic reticulum 4
extracellular 3
vacuole 3
plasma membrane 3
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017929	Potato	endoplasmic reticulum, golgi	98.36	98.36
CDX70565	Canola	endoplasmic reticulum	70.66	70.89
Bra006254.1-P	Field mustard	endoplasmic reticulum, golgi	70.49	70.72
CDX78577	Canola	endoplasmic reticulum, golgi	70.16	70.39
TraesCS3A01G475800.1	Wheat	cytosol	57.54	69.92
AT5G14430.1	Thale cress	endoplasmic reticulum	69.84	69.61
GSMUA_Achr7P20830_001	Banana	endoplasmic reticulum, golgi, vacuole	66.72	66.83
Os06t0687450-01	Rice	endoplasmic reticulum, golgi	64.59	65.56
TraesCS7A01G444200.1	Wheat	plastid	63.61	63.82
HORVU7Hr1G100920.3	Barley	plastid	62.46	63.71
TraesCS7D01G433000.1	Wheat	plastid	63.61	63.3
TraesCS7B01G342700.1	Wheat	plastid	63.11	62.81
Solyc09g090190.2.1	Tomato	nucleus	61.31	60.52
Solyc03g005600.2.1	Tomato	nucleus, unclear	59.34	58.39
Zm00001d036545_P001	Maize	golgi	48.85	54.58
Solyc10g079450.1.1	Tomato	plasma membrane	42.3	42.23
Solyc01g010870.2.1	Tomato	nucleus, unclear	38.03	38.22
Solyc08g013740.2.1	Tomato	unclear	39.02	37.72
Solyc03g116150.2.1	Tomato	nucleus	35.9	37.5
Solyc06g069870.2.1	Tomato	endoplasmic reticulum	37.38	37.07
Solyc06g035790.2.1	Tomato	plastid	39.34	36.87
Solyc05g007490.2.1	Tomato	nucleus, plastid, unclear	36.89	36.76
Solyc08g075870.2.1	Tomato	nucleus, unclear	35.9	36.68
Solyc01g091690.2.1	Tomato	plastid	38.2	36.64
Solyc01g091640.2.1	Tomato	nucleus	35.9	36.56
Solyc01g009600.2.1	Tomato	plastid	37.87	36.44
Solyc05g052970.2.1	Tomato	endoplasmic reticulum	40.33	36.28
Solyc08g077240.2.1	Tomato	nucleus	36.56	36.2
Solyc03g026120.2.1	Tomato	plastid	38.2	35.85
Solyc08g005490.2.1	Tomato	nucleus, unclear	35.08	35.85
Solyc06g051000.2.1	Tomato	plastid	36.39	34.58
Solyc04g058180.2.1	Tomato	plastid	35.41	33.44
Solyc04g063230.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	38.36	30.47
Solyc05g056580.2.1	Tomato	golgi	38.69	29.03
Solyc05g052500.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	37.05	28.97
Solyc02g084670.2.1	Tomato	unclear	36.89	25.48
Solyc04g080360.2.1	Tomato	nucleus	30.33	23.78

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005618
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005773	GO:GO:0005774
GO:GO:0005794	GO:GO:0005802	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757
GO:GO:0009505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0030312	GO:GO:0032259
UniProt:K4B7C1	PFAM:PF03141	PANTHER:PTHR10108	PANTHER:PTHR10108:SF692	InterPro:Put_SAM_MeTrfase	InterPro:SAM-dependent_MTases
SUPFAM:SSF53335	EnsemblPlantsGene:Solyc02g067890.2	EnsemblPlants:Solyc02g067890.2.1	TMHMM:TMhelix	UniParc:UPI0002767745	SEG:seg

Description

No Description!

Coordinates

chr2:-:37979760..37983986

Molecular Weight (calculated)

70106.1 Da

IEP (calculated)

7.948

GRAVY (calculated)

-0.308

Length

610 amino acids

Sequence
(BLAST)

001: MKQKKELSHR PKLLKYVLFG MIVFLGLVCL YNCSFMGPGL PIARDHLAID DGSDPVTGIS YHGRMDMDME DQELEVPKSI PVCDMSYSEL IPCLDRNLIY
101: QLRLRLNLTV MEHYERHCPP PERRFNCLIP PPAGYKIPIR WPASRDQVWK ANIPHTHLAQ EKSDQNWMIV DGDKIKFPGG GTHFHYGADI YIAAIAGMLK
201: LPGEKLSNGG NIRNVLDVGC GVASFGAYLL SHDIIAMSLA PNDVHENQIQ FALERGIPST LGVLGTKRLP YPSRSFELAH CSRCRIDWLQ RDGILLLELD
301: RLLRPGGYFV YSSPEAYAHD AENRRIWNAM YDLLRRMCWR VVSRRDQTVI WAKPLSNSCY MKRSRGTQPP LCISGDEPDE SWNVPMKACI TPYSAKVHKE
401: KGTGLEPWPR RLMAPPPRLE EIGVTLDEFH KDTNVWHERV VEYWKQMKSV VLKNSVRNVM DMNSNLGGFA AALKDKDIWV MNVAPVNMSS RLKIIYDRGL
501: IGTVHDWCES FSTYPRTYDL LHSWMILSET EDRGCSIEDL LIEMDRMLRP EGFIIIRDKP HIINSVRKFL PALKWDGWSS EVEPRTDALS LSEERILIIR
601: KNFWREKLTV

Best Arabidopsis Sequence Match ( AT5G14430.1 )
(BLAST)

001: MKHFRTERVR ATPKLFTYVL VGFIALLGLT CLYYGSSFAP GSRKSDEFDG SNNRVRTGIG SLRNRDIVLA VSRFEVPKSV PICDSRHSEL IPCLDRNLHY
101: QLKLKLNLSL MEHYEHHCPP SERRFNCLVP PPVGYKIPLR WPVSRDEVWK ANIPHTHLAQ EKSDQNWMVV NGDKINFPGG GTHFHNGADK YIVSLAQMLK
201: FPGDKLNNGG SIRNVLDVGC GVASFGAYLL SHDIIAMSLA PNDVHQNQIQ FALERGIPST LGVLGTKRLP YPSRSFELAH CSRCRIDWLQ RDGILLLELD
301: RLLRPGGYFV YSSPEAYAHD PENRKIGNAM HDLFKRMCWK VVAKRDQSVI WGKPISNSCY LKRDPGVLPP LCPSGDDPDA TWNVSMKACI SPYSVRMHKE
401: RWSGLVPWPR RLTAPPPRLE EIGVTPEQFR EDTETWRLRV IEYWKLLKPM VQKNSIRNVM DMSSNLGGFA AALNDKDVWV MNVMPVQSSP RMKIIYDRGL
501: IGATHDWCEA FDTYPRTFDL IHAWNTFTET QARGCSFEDL LIEMDRILRP EGFVIIRDTT DNISYIKKYL TLLKWDKWST ETTPKGDPLS TKDEIVLIAR
601: KKLWSLPAIS VS

Arabidopsis Description

Probable methyltransferase PMT9 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZV7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.