Factsheet for TraesCS6D01G237200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G269400.1	Wheat	mitochondrion, plastid	98.6	98.6
TraesCS6A01G256000.1	Wheat	mitochondrion	97.98	98.28
HORVU6Hr1G065360.4	Barley	mitochondrion	97.98	97.67
Os02t0675700-01	Rice	mitochondrion	87.4	87.0
EES05735	Sorghum	mitochondrion, plastid	85.23	82.28
Zm00001d051442_P002	Maize	plasma membrane	82.27	81.76
TraesCS2D01G397900.1	Wheat	mitochondrion	76.21	76.8
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, golgi	58.79	71.19
GSMUA_Achr5P13670_001	Banana	plastid	65.32	70.59
KRH00647	Soybean	cytosol	57.39	68.46
GSMUA_Achr5P03280_001	Banana	plastid	57.39	64.29
CDY01971	Canola	endoplasmic reticulum, extracellular	41.52	64.18
KRG91450	Soybean	mitochondrion	59.56	63.83
PGSC0003DMT400037042	Potato	plastid	64.23	63.83
Solyc03g026120.2.1	Tomato	plastid	63.76	63.08
VIT_15s0048g01940.t01	Wine grape	mitochondrion	61.9	62.97
KRH09116	Soybean	endoplasmic reticulum	61.59	62.66
KRH38569	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	61.43	62.4
PGSC0003DMT400065051	Potato	plastid	63.45	62.39
KRH40534	Soybean	endoplasmic reticulum, mitochondrion, vacuole	60.19	62.22
VIT_16s0100g00570.t01	Wine grape	mitochondrion	63.45	62.2
Solyc06g035790.2.1	Tomato	plastid	62.67	61.9
PGSC0003DMT400071370	Potato	endoplasmic reticulum, golgi	60.81	61.48
Solyc01g091690.2.1	Tomato	plastid	60.34	61.01
Solyc01g009600.2.1	Tomato	plastid	59.72	60.57
Bra008529.1-P	Field mustard	mitochondrion	58.48	60.55
PGSC0003DMT400030542	Potato	plastid	59.88	60.44
CDY54063	Canola	mitochondrion	51.63	59.93
CDY18904	Canola	endoplasmic reticulum	58.79	59.72
CDX74761	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	58.63	59.65
Bra004933.1-P	Field mustard	cytosol, endoplasmic reticulum, mitochondrion, plastid	58.63	59.65
AT2G45750.1	Thale cress	endoplasmic reticulum, golgi	58.48	59.59
AT4G00750.1	Thale cress	mitochondrion	58.48	59.4
CDY37061	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	57.54	58.92
Bra039319.1-P	Field mustard	golgi	57.23	58.23
TraesCS7D01G027500.1	Wheat	endoplasmic reticulum, golgi	56.61	57.87
TraesCS6D01G025000.1	Wheat	cytosol	56.61	57.69
KRH48242	Soybean	endoplasmic reticulum	57.39	57.57
TraesCS5D01G234300.1	Wheat	endoplasmic reticulum, golgi	54.59	57.17
TraesCS1D01G216200.1	Wheat	endoplasmic reticulum, golgi	51.94	55.3
TraesCS5D01G429900.1	Wheat	endoplasmic reticulum, golgi, vacuole	52.57	55.23
TraesCS4D01G150500.1	Wheat	endoplasmic reticulum	51.01	53.07
TraesCS1D01G202300.2	Wheat	endoplasmic reticulum	43.39	45.89
TraesCS2D01G398400.1	Wheat	golgi, mitochondrion, plastid	40.28	44.73
TraesCS3D01G389400.1	Wheat	endoplasmic reticulum	40.28	42.53
TraesCS7D01G433000.1	Wheat	plastid	36.86	38.66
TraesCS1D01G153300.1	Wheat	endoplasmic reticulum, golgi	35.15	36.69
CDY27362	Canola	plasma membrane	56.61	36.08
TraesCS1D01G238600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	32.97	35.33
TraesCS3D01G356400.1	Wheat	endoplasmic reticulum	36.39	33.52
TraesCS2D01G569900.1	Wheat	plastid	36.08	33.0
TraesCS1D01G294500.1	Wheat	golgi, plasma membrane, plastid	32.81	31.63
TraesCS3D01G401300.2	Wheat	golgi	37.79	30.26
TraesCS3D01G342700.1	Wheat	golgi	32.81	29.47
TraesCS5D01G418500.1	Wheat	mitochondrion	31.26	27.8
TraesCS7D01G380100.1	Wheat	mitochondrion	35.93	25.3
TraesCS4D01G094600.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, plastid, vacuole	34.53	24.86
TraesCS5D01G127100.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	35.77	22.62

Protein Annotations

EnsemblPlants:TraesCS6D01G237200.1	EnsemblPlantsGene:TraesCS6D01G237200	Gene3D:3.40.50.150	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	InterPro:Put_SAM_MeTrfase	InterPro:SAM-dependent_MTases	PANTHER:PTHR10108
PANTHER:PTHR10108:SF856	PFAM:PF03141	SEG:seg	SUPFAM:SSF53335	TMHMM:TMhelix	MapMan:35.1

Description

No Description!

Coordinates

chr6D:-:335373919..335377477

Molecular Weight (calculated)

71293.1 Da

IEP (calculated)

9.215

GRAVY (calculated)

-0.290

Length

643 amino acids

Sequence
(BLAST)

001: MGVRSAATKL HIPPTHSAAR RSFFLPLAAV ALLCSASYLL GAWHHGGGFS PSSPSRSVTI ATDISCTTTT LTPSTTTTTT TTAQSLDFSA HHAAAVDAVA
101: ARAASSASSA PRRYPACPAE YSEYTPCEDV KRSLRYPRDR LVYRERHCPS GRERLRCLVP APAGYRNPFP WPASRDVAWF ANVPHKELTV EKAVQNWIRV
201: DGDKLRFPGG GTMFPHGADA YIDDIGKLIP LHDGSIRTAL DTGCGVASWG AYLLSRDILA MSFAPRDSHE AQVQFALERG VPAMIGVLAS NRLTYPARAF
301: DMAHCSRCLI PWHLYDGLYL IEVDRVLRPG GYWILSGPPI NWKKYWKGWE RSKEDLNAEQ EAIEAVARSL CWKKIKEAGD IAVWQKPANH AGCKASRKAA
401: KSPPFCSKKN ADAAWYDKME ACVTPLPEVS DASEVAGGAV KKWPQRLTAV PPRVSRGTVK GVTAKAFQQD TELWKKRVRH YKAVINQFEQ KGRYRNVLDM
501: NARLGGFAAA LASYPQWVMN MVPTVANSSA LGVVYERGLI GSYQDWCEGT STYPRTYDLI HADSVFTLYK NRCEMDTILL EMDRVLRPEG TVIIRDDVDM
601: LVKVKSVADG MRWDSQIVDH EDGPLVREKI LLVAKTYWTA KNQ

Best Arabidopsis Sequence Match ( AT2G45750.1 )
(BLAST)

001: MNLFTRISSR TKKANLYYVT LVALLCIASY LLGIWQNTAV NPRAAFDDSD GTPCEGFTRP NSTKDLDFDA HHNIQDPPPV TETAVSFPSC AAALSEHTPC
101: EDAKRSLKFS RERLEYRQRH CPEREEILKC RIPAPYGYKT PFRWPASRDV AWFANVPHTE LTVEKKNQNW VRYENDRFWF PGGGTMFPRG ADAYIDDIGR
201: LIDLSDGSIR TAIDTGCGVA SFGAYLLSRN ITTMSFAPRD THEAQVQFAL ERGVPAMIGI MATIRLPYPS RAFDLAHCSR CLIPWGQNDG AYLMEVDRVL
301: RPGGYWILSG PPINWQKRWK GWERTMDDLN AEQTQIEQVA RSLCWKKVVQ RDDLAIWQKP FNHIDCKKTR EVLKNPEFCR HDQDPDMAWY TKMDSCLTPL
401: PEVDDAEDLK TVAGGKVEKW PARLNAIPPR VNKGALEEIT PEAFLENTKL WKQRVSYYKK LDYQLGETGR YRNLVDMNAY LGGFAAALAD DPVWVMNVVP
501: VEAKLNTLGV IYERGLIGTY QNWCEAMSTY PRTYDFIHAD SVFTLYQGQC EPEEILLEMD RILRPGGGVI IRDDVDVLIK VKELTKGLEW EGRIADHEKG
601: PHEREKIYYA VKQYWTVPAP DEDKNNTSAL S

Arabidopsis Description

Probable methyltransferase PMT16 [Source:UniProtKB/Swiss-Prot;Acc:O80844]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.