Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400010646 | |
| PGSC0003DMT400022249 | |
| PGSC0003DMT400030287 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G13540.1 | PGSC0003DMT400022249 | AT4G13540.1 | 21798944 |
| AT4G13540.1 | PGSC0003DMT400030287 | AT4G13540.1 | 21798944 |
| AT4G13540.1 | PGSC0003DMT400010646 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g097060.1.1 | Tomato | cytosol | 95.98 | 95.98 |
| PGSC0003DMT400030287 | Potato | nucleus | 43.75 | 59.39 |
| VIT_05s0077g00530.t01 | Wine grape | nucleus | 45.54 | 50.75 |
| KRH15737 | Soybean | nucleus | 24.11 | 46.96 |
| KRH33541 | Soybean | nucleus | 41.52 | 41.15 |
| KRG90296 | Soybean | nucleus | 41.52 | 40.79 |
| Bra032712.1-P | Field mustard | cytosol | 31.25 | 36.65 |
| CDY47363 | Canola | nucleus | 34.38 | 36.32 |
| GSMUA_Achr1P11070_001 | Banana | nucleus | 28.57 | 36.16 |
| AT4G13540.1 | Thale cress | nucleus | 33.48 | 35.71 |
| CDY01136 | Canola | nucleus | 33.48 | 35.55 |
| CDX77442 | Canola | nucleus | 35.27 | 34.65 |
| Bra015024.1-P | Field mustard | nucleus | 34.82 | 34.51 |
| CDY45564 | Canola | nucleus | 34.82 | 34.51 |
| AT3G23930.1 | Thale cress | nucleus | 33.48 | 33.48 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400022249 | EnsemblPlantsGene:PGSC0003DMG400008629 | EntrezGene:102594551 | ncoils:Coil | PANTHER:PTHR37226 | PGSC:PGSC0003DMG400008629 |
| RefSeq:XP_006367315.2 | SEG:seg | UniParc:UPI000296EB44 | UniProt:M1AGF5 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008629]
Coordinates
chr12:+:58812548..58814268
Molecular Weight (calculated)
27233.8 Da
IEP (calculated)
5.406
GRAVY (calculated)
-1.018
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLQTKNHK NNPNAKIIEE LKYKVRLLQK EVSEIMCIRE NESEIYNQEM IVFALKEEEW KQEKKKLNEE LNDLKKKLED YKEDEEKVEN QEMVSEKCDN
101: KEFHMLVRNS LLEKIREEEV RRDEAIEKWK NLYFVIKNEL DELIQRTNQG ERLCWRTEEV ELLEELHMEL KAKEEVIAHL KEKIASMEKQ EVKREREIDI
201: LRQSLKIMSY NKKVPSLSKV FYKN
101: KEFHMLVRNS LLEKIREEEV RRDEAIEKWK NLYFVIKNEL DELIQRTNQG ERLCWRTEEV ELLEELHMEL KAKEEVIAHL KEKIASMEKQ EVKREREIDI
201: LRQSLKIMSY NKKVPSLSKV FYKN
001: MGGSTSKDER NSSKRRIKVK ANEQRRRETR RELDEKERVI LALKMAETEW RKERKRLREE VKRLRQKMEE KEEGKAKQHE WEWVVEQMCL ERAVREEAVE
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
Arabidopsis Description
Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:Q9T0H4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.