CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05690.1	CDY16196	AT1G26830.1	15772280
AT1G05690.1	CDY45004	AT1G26830.1	15772280
AT1G05690.1	CDY46437	AT1G26830.1	15772280
AT1G05690.1	CDY50732	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G05690.1	Thale cress	plastid	59.13	59.62
CDX86561	Canola	nucleus	60.22	52.74
CDY15554	Canola	nucleus	59.67	51.65
Zm00001d009478_P001	Maize	extracellular	19.07	45.45
Zm00001d035819_P001	Maize	extracellular	17.98	43.71
GSMUA_Achr6P18360_001	Banana	plastid	44.96	43.19
VIT_05s0094g00950.t01	Wine grape	cytosol, plastid	47.41	42.75
PGSC0003DMT400064939	Potato	nucleus	45.78	41.69
Solyc08g014440.2.1	Tomato	nucleus	42.51	41.16
TraesCS3A01G400400.1	Wheat	cytosol	43.6	40.4
TraesCS3B01G433400.1	Wheat	nucleus	43.6	40.0
Os01t0893400-01	Rice	nucleus	42.51	37.77
CDY36495	Canola	cytosol	38.96	37.63
CDY08721	Canola	cytosol	38.69	37.37
PGSC0003DMT400013718	Potato	cytosol	26.7	37.12
CDY50978	Canola	nucleus, plastid	37.33	36.63
CDX75666	Canola	nucleus	37.33	36.63
HORVU3Hr1G090000.4	Barley	nucleus	42.51	36.45
CDY29568	Canola	nucleus	37.06	35.88
CDX72641	Canola	nucleus, plastid	37.06	35.79
OQU88021	Sorghum	nucleus	40.87	35.29
Zm00001d042549_P001	Maize	nucleus	41.42	34.78
CDY41504	Canola	nucleus	31.34	34.64
Solyc12g019420.1.1	Tomato	cytosol	23.43	33.99
CDX84392	Canola	nucleus	31.88	32.32
CDY48173	Canola	nucleus	31.61	31.96
Zm00001d046179_P001	Maize	cytosol, endoplasmic reticulum	15.8	31.18
CDY39576	Canola	nucleus	31.06	31.06
CDY30743	Canola	nucleus	32.7	30.23
CDY45741	Canola	nucleus	32.43	29.97
CDY70710	Canola	nucleus	12.26	28.66

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	GO:A0A078F6P8
UniProt:A0A078F6P8	InterPro:BTB/POZ_dom	EnsemblPlants:CDY10140	ProteinID:CDY10140	ProteinID:CDY10140.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00031950001	InterPro:IPR000197
InterPro:IPR000210	InterPro:IPR035898	PFAM:PF00651	PFAM:PF02135	PFscan:PS50097	PANTHER:PTHR24413
PANTHER:PTHR24413:SF140	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695
SUPFAM:SSF57933	InterPro:TAZ_dom_sf	UniParc:UPI0004EC9BA2	InterPro:Znf_TAZ	SEG:seg	:

Description

BnaC05g03830DBnaC05g03830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6P8]

Coordinates

chrLK032001:+:225250..226754

Molecular Weight (calculated)

41615.4 Da

IEP (calculated)

8.329

GRAVY (calculated)

-0.305

Length

367 amino acids

Sequence
(BLAST)

001: MSSTKMNIPK PPPLPRVTYQ RLQASKTKPS SSSSRLVPKE TVATWDKVFR DGTGGDTNVQ TEDNYYLLAH SSILSAASPV IANLLNQSRD KNGKPYLKIS
101: GVPYQPVHMF LRFLYSSCYE EDEMKECVIP LLFLSHIYSI PSLKRVCVDV LDQEGYINKE NVVDVLLLAR ACDAVRICFR CISMVVKDFE SISPTEGWKE
201: MIRSDPLLEQ EVEAAVEAQK ERQERRVKLV EKKTYLELYE TLESLVHIYR EGCVTIGPRD KELRGGSETV CEFRFCKGVE GALRHFLGCK SRASSCSRCK
301: RLWQLFQLHA CICDDDSDSC EVPLCRSLKE KMKISKRDES KGRLLAEKVM AAKNSLGPFS ARLFALV

Best Arabidopsis Sequence Match ( AT1G05690.1 )
(BLAST)

001: MSSSTKNIPK PPPLPCITYQ RFQSSTRKPS SLMRLVPKEA LETWDKLFKE GSGADTYVET DNKSHFPAHS SVLAAASPVI ATLLNQSRDK NGNTYLKIHG
101: VPCEAVYMFI RFLYSSCYEE EEMKKFVLHL LVLSHCYSVP SLKRLCVEIL DQGWINKENV IDVLQLARNC DVTRICFVCL SMVIKDFKSV SSTEGWKVMK
201: RSNPLLEQEL IEAVIESDSR KQERRRKLEE REVYLQLYEA MEALVHICRE GCGTIGPRDK ALKGSHTVCK FPACKGLEGA LRHFLGCKSR ASCSHCKRMW
301: QLLQLHSCIC DDSNSCKVSL CWNFKEKMKK LSKKEQSKWR LLVENIIRAR NSLGPFSSRS SGLI

Arabidopsis Description

BT3BTB/POZ and TAZ domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYL0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.