CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05690.1	CDY16196	AT1G26830.1	15772280
AT1G05690.1	CDY45004	AT1G26830.1	15772280
AT1G05690.1	CDY46437	AT1G26830.1	15772280
AT1G05690.1	CDY50732	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030621.1-P	Field mustard	endoplasmic reticulum	97.88	90.22
CDX86561	Canola	nucleus	85.85	86.87
AT1G05690.1	Thale cress	plastid	62.03	72.25
CDY10140	Canola	plastid	51.65	59.67
VIT_05s0094g00950.t01	Wine grape	cytosol, plastid	49.53	51.6
Zm00001d009478_P001	Maize	extracellular	18.16	50.0
Solyc08g014440.2.1	Tomato	nucleus	42.69	47.76
PGSC0003DMT400064939	Potato	nucleus	45.28	47.64
Zm00001d035819_P001	Maize	extracellular	16.75	47.02
PGSC0003DMT400013718	Potato	cytosol	28.07	45.08
GSMUA_Achr6P18360_001	Banana	plastid	40.09	44.5
TraesCS3A01G400400.1	Wheat	cytosol	41.51	44.44
TraesCS3B01G433400.1	Wheat	nucleus	41.75	44.25
Os01t0893400-01	Rice	nucleus	41.27	42.37
CDY36495	Canola	cytosol	37.97	42.37
OQU88021	Sorghum	nucleus	42.45	42.35
CDY08721	Canola	cytosol	37.26	41.58
HORVU3Hr1G090000.4	Barley	nucleus	41.51	41.12
Zm00001d042549_P001	Maize	nucleus	41.51	40.27
CDY50978	Canola	nucleus, plastid	34.2	38.77
Solyc12g019420.1.1	Tomato	cytosol	23.11	38.74
CDY29568	Canola	nucleus	33.96	37.99
CDX72641	Canola	nucleus, plastid	33.96	37.89
CDX75666	Canola	nucleus	33.25	37.7
CDY41504	Canola	nucleus	29.25	37.35
CDX84392	Canola	nucleus	29.48	34.53
Zm00001d046179_P001	Maize	cytosol, endoplasmic reticulum	14.86	33.87
CDY39576	Canola	nucleus	28.54	32.97
CDY48173	Canola	nucleus	28.07	32.78
CDY45741	Canola	nucleus	30.19	32.24
CDY30743	Canola	nucleus	29.95	31.99
CDY70710	Canola	nucleus	11.79	31.85

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	GO:A0A078FRR5
UniProt:A0A078FRR5	InterPro:BTB/POZ_dom	EnsemblPlants:CDY15554	ProteinID:CDY15554	ProteinID:CDY15554.1	GO:GO:0003674
GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00089730001	InterPro:IPR000197	InterPro:IPR000210
InterPro:IPR035898	PFAM:PF00651	PFAM:PF02135	PFscan:PS50097	PFscan:PS50134	PANTHER:PTHR24413
PANTHER:PTHR24413:SF140	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695
SUPFAM:SSF57933	InterPro:TAZ_dom_sf	UniParc:UPI0004EE61F2	InterPro:Znf_TAZ	SEG:seg	:

Description

BnaA08g28380DBnaA08g28380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRR5]

Coordinates

chrLK032055:+:505918..507622

Molecular Weight (calculated)

48117.6 Da

IEP (calculated)

9.221

GRAVY (calculated)

-0.250

Length

424 amino acids

Sequence
(BLAST)

001: MMNCETENLY VYFVSKFRTL WSMLSSHVRL LTLWSMLCRF KNCNIIYSQV AGFDSMASSE VSTCAKNIPK PPPLPRVTYQ ASRSKPSSSS SRLVPQETVE
101: TWDKLFKEGT GADTYVEVDN KSHFLAHSYI LAAASPVMPQ LLNQSRDKKG NSHLKFLGVP QEAVYMFIRF LYSCSYEEED MKKYVLPLLV LSHCYSVPSL
201: KRVCIEVLGQ GWINKENVID VLQLARTCDA ARISFLCVSM VIRDFKSVSS TEGWKVMTRG DRKLEKELLE AVVEADARRE ERRKKVEERR MYLELCEAVE
301: ALVHIYREGC GTIGPRGKAL KGSKAVCEFS ACKGVEGGLR HFLGCKSARA SCGHCKRMWQ LIQLHSCLCG SSDSCEVPLC RNFKEKMKKI SKREESKWRL
401: LAEHVTTAKR SLGPFSSSRR SALI

Best Arabidopsis Sequence Match ( AT1G05690.1 )
(BLAST)

001: MSSSTKNIPK PPPLPCITYQ RFQSSTRKPS SLMRLVPKEA LETWDKLFKE GSGADTYVET DNKSHFPAHS SVLAAASPVI ATLLNQSRDK NGNTYLKIHG
101: VPCEAVYMFI RFLYSSCYEE EEMKKFVLHL LVLSHCYSVP SLKRLCVEIL DQGWINKENV IDVLQLARNC DVTRICFVCL SMVIKDFKSV SSTEGWKVMK
201: RSNPLLEQEL IEAVIESDSR KQERRRKLEE REVYLQLYEA MEALVHICRE GCGTIGPRDK ALKGSHTVCK FPACKGLEGA LRHFLGCKSR ASCSHCKRMW
301: QLLQLHSCIC DDSNSCKVSL CWNFKEKMKK LSKKEQSKWR LLVENIIRAR NSLGPFSSRS SGLI

Arabidopsis Description

BT3BTB/POZ and TAZ domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYL0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.