Factsheet for VIT_05s0094g00950.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05690.1	VIT_01s0026g02230.t01	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064939	Potato	nucleus	65.36	66.0
Solyc08g014440.2.1	Tomato	nucleus	58.23	62.53
AT1G05690.1	Thale cress	plastid	55.28	61.81
PGSC0003DMT400013718	Potato	cytosol	37.59	57.95
Zm00001d009478_P001	Maize	extracellular	21.13	55.84
TraesCS3A01G400400.1	Wheat	cytosol	53.56	55.05
TraesCS3B01G433400.1	Wheat	nucleus	54.05	55.0
GSMUA_Achr6P18360_001	Banana	plastid	51.35	54.71
OQU88021	Sorghum	nucleus	55.53	53.18
Zm00001d035819_P001	Maize	extracellular	19.41	52.32
Os01t0893400-01	Rice	nucleus	53.07	52.3
HORVU3Hr1G090000.4	Barley	nucleus	53.81	51.17
VIT_07s0129g00210.t01	Wine grape	cytosol, nucleus, plastid	45.95	50.4
CDX86561	Canola	nucleus	51.35	49.88
CDY15554	Canola	nucleus	51.6	49.53
Zm00001d042549_P001	Maize	nucleus	52.58	48.97
CDY10140	Canola	plastid	42.75	47.41
Bra030621.1-P	Field mustard	endoplasmic reticulum	51.84	45.87
Solyc12g019420.1.1	Tomato	cytosol	28.5	45.85
VIT_17s0000g09790.t01	Wine grape	cytosol	35.38	41.5
Zm00001d046179_P001	Maize	cytosol, endoplasmic reticulum	14.74	32.26

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	EntrezGene:100254312	wikigene:100254312	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4
Gene3D:3.30.710.10	EMBL:AM474223	InterPro:BTB/POZ_dom	ProteinID:CAN79405	ProteinID:CAN79405.1	ProteinID:CBI24713
ProteinID:CBI24713.3	ncoils:Coil	UniProt:D7T2I2	EMBL:FN595507	GO:GO:0003674	GO:GO:0003712
GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009058	GO:GO:0009409	GO:GO:0009553	GO:GO:0009555	GO:GO:0009628
GO:GO:0009651	GO:GO:0009719	GO:GO:0009723	GO:GO:0009751	GO:GO:0009987	GO:GO:0016043
GO:GO:0016573	GO:GO:0016740	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625
GO:GO:0042542	GO:GO:0042787	GO:GO:0043161	InterPro:IPR000197	InterPro:IPR000210	InterPro:IPR035898
EntrezGene:LOC100254312	wikigene:LOC100254312	PFAM:PF00651	PFAM:PF02135	PFscan:PS50097	PFscan:PS50134
PANTHER:PTHR24413	PANTHER:PTHR24413:SF140	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00551	InterPro:SPOP_C
SUPFAM:SSF54695	SUPFAM:SSF57933	InterPro:TAZ_dom_sf	UniParc:UPI00015CB74B	ArrayExpress:VIT_05s0094g00950	EnsemblPlantsGene:VIT_05s0094g00950
EnsemblPlants:VIT_05s0094g00950.t01	unigene:Vvi.25701	RefSeq:XP_002278433	RefSeq:XP_002278433.2	RefSeq:XP_010650726.1	RefSeq:XP_010650727.1
RefSeq:XP_019075766.1	InterPro:Znf_TAZ	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:24277026..24282144

Molecular Weight (calculated)

45504.6 Da

IEP (calculated)

8.886

GRAVY (calculated)

-0.214

Length

407 amino acids

Sequence
(BLAST)

001: MASPDLVSSL PCSTGESFSG SFNIAIEETS PANFLPVLEV SNSSVCNNSN IPKPPPLPGK TYTKTSYPKR LANCSSVPRE TKDTWDKLFK DGYGADIHII
101: TEDGPIIPAH SCVLGVASPV LGNFLQLSKV KKGIRYIKIP GVPCEAAYAF IRFLYSSSFE EEEMKKFVLH LLVLSHSYSV PSLKRLCAHH LEQGWMTPEN
201: LIDVLQLARK CDAPRLSLIC TRMIVKDFKT ISSTQGWKVM KRVDPALEQE LLEAVVEADS RKEERLKKIE EKKVYLQLHE AMEALLHICR DGCRTIGPRD
301: KVLKGSQVAC GFPACKGLET LVRHFSSCKT RVPGGCVHCK RMWQLLELHS RMCSEPDCCK VPLCRHFKEK MQQQSKKDET KWKLLVSKVI AVKNSLGPFP
401: ARSSGLL

Best Arabidopsis Sequence Match ( AT1G05690.1 )
(BLAST)

001: MSSSTKNIPK PPPLPCITYQ RFQSSTRKPS SLMRLVPKEA LETWDKLFKE GSGADTYVET DNKSHFPAHS SVLAAASPVI ATLLNQSRDK NGNTYLKIHG
101: VPCEAVYMFI RFLYSSCYEE EEMKKFVLHL LVLSHCYSVP SLKRLCVEIL DQGWINKENV IDVLQLARNC DVTRICFVCL SMVIKDFKSV SSTEGWKVMK
201: RSNPLLEQEL IEAVIESDSR KQERRRKLEE REVYLQLYEA MEALVHICRE GCGTIGPRDK ALKGSHTVCK FPACKGLEGA LRHFLGCKSR ASCSHCKRMW
301: QLLQLHSCIC DDSNSCKVSL CWNFKEKMKK LSKKEQSKWR LLVENIIRAR NSLGPFSSRS SGLI

Arabidopsis Description

BT3BTB/POZ and TAZ domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYL0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.