Factsheet for TraesCS3A01G400400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05690.1	TraesCS6A01G306600.1	AT1G26830.1	15772280
AT1G05690.1	TraesCS6B01G335200.1	AT1G26830.1	15772280
AT1G05690.1	TraesCS6D01G285800.1	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G433400.1	Wheat	nucleus	89.39	88.5
HORVU3Hr1G090000.4	Barley	nucleus	86.36	79.91
Zm00001d009478_P001	Maize	extracellular	27.78	71.43
Zm00001d035819_P001	Maize	extracellular	25.51	66.89
OQU88021	Sorghum	nucleus	68.69	64.0
Os01t0893400-01	Rice	nucleus	66.41	63.68
Zm00001d042549_P001	Maize	nucleus	66.92	60.64
GSMUA_Achr6P18360_001	Banana	plastid	53.79	55.76
VIT_05s0094g00950.t01	Wine grape	cytosol, plastid	55.05	53.56
AT1G05690.1	Thale cress	plastid	46.46	50.55
PGSC0003DMT400064939	Potato	nucleus	51.26	50.37
Solyc08g014440.2.1	Tomato	nucleus	46.21	48.28
Zm00001d046179_P001	Maize	cytosol, endoplasmic reticulum	21.46	45.7
PGSC0003DMT400013718	Potato	cytosol	29.29	43.94
CDY10140	Canola	plastid	40.4	43.6
CDX86561	Canola	nucleus	44.95	42.48
CDY15554	Canola	nucleus	44.44	41.51
Solyc12g019420.1.1	Tomato	cytosol	25.25	39.53
Bra030621.1-P	Field mustard	endoplasmic reticulum	44.7	38.48
TraesCS2A01G323000.1	Wheat	cytosol	30.05	35.1
TraesCS3A01G413600.1	Wheat	cytosol, plastid	30.3	34.48
TraesCS3A01G413700.1	Wheat	cytosol, plastid	30.56	34.47
TraesCS2A01G323200.1	Wheat	cytosol	29.29	33.53

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005516	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0006464	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009409	GO:GO:0009553	GO:GO:0009555	GO:GO:0009628
GO:GO:0009651	GO:GO:0009719	GO:GO:0009723	GO:GO:0009751	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0019538	GO:GO:0042542	InterPro:IPR000197	InterPro:IPR000210	InterPro:IPR035898
PFAM:PF00651	PFAM:PF02135	PFscan:PS50097	PFscan:PS50134	PANTHER:PTHR24413	PANTHER:PTHR24413:SF140
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933
InterPro:TAZ_dom_sf	EnsemblPlantsGene:TraesCS3A01G400400	EnsemblPlants:TraesCS3A01G400400.1	InterPro:Znf_TAZ	TIGR:cd14734	SEG:seg

Description

No Description!

Coordinates

chr3A:-:647144941..647146992

Molecular Weight (calculated)

45076.1 Da

IEP (calculated)

8.877

GRAVY (calculated)

-0.232

Length

396 amino acids

Sequence
(BLAST)

001: MAPLESSSSQ LFFDSTFDVY DCGTLAGTRV VPDPPPLPGT SYGKQRSSRN AKEARCVHDV PEEVRDCWNR LFLEGYQADV RVSTDDGSEI LSHSCILGIR
101: SPVLRSMLEE ARVEDGFRNI LISGVPSEAA RVFIRFLYSS RFEQDEMKKY ALHLLVLSHV FSVPSLKIVC TDQLERFSLA PDNVVDVLQL ARLCDAPRLS
201: LMCTRMITGD FKTISLSEGW KVMRRANPSL EQELLEFLVE VDTRRQERAK RMEEKKVYLQ LYEAMEALVH ICRDGCRTIG PWDQKLKGSQ VVCKFPACKG
301: IELLVRHFSA CKMRVPRGCS NCKRMWQLLE LHSRMCSTPG TCRVPLCRHF KDKMRHRSKK EELKWVLLVC KVLGSKGTID SVLKARKISP LKPIGA

Best Arabidopsis Sequence Match ( AT5G67480.2 )
(BLAST)

001: MQGREDKLNK RMVTGCVDLH QSFKSADSSS VPIPPPLPSK SDGLKKKLGH SSVSTATRDM WDRLFNDGYK ADVVIYTDNG SIIYAHANIL GTASTVIKGM
101: LKQAKRHGKW HTISIRGVPH DAVRVFIRFL YSSCYEKEEM NEFIMHLLLL SHAYVVPQLK RVCEWHLEHG LLTTENVVDV FQLALLCDFP RLSLISHRMI
201: MKHFNELSAT EAWTAMKKSH PFLEKEVRDS VIIEANTRKE RMRKRNDQRI YSQLYEAMEA LVHICRDGCK TIGPHDKDFK PNHATCNYEA CKGLESLIRH
301: FAGCKLRVPG GCVHCKRMWQ LLELHSRVCA GSDQCRVPLC RNLKEKMEKQ SKKDESRWKL LVKNVLGSKK IGGSPFFLPV TNC

Arabidopsis Description

BT4BTB and TAZ domain protein 4 [Source:TAIR;Acc:AT5G67480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.