Factsheet for PGSC0003DMT400013718

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400016765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05690.1	PGSC0003DMT400016765	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g019420.1.1	Tomato	cytosol	62.12	64.82
Zm00001d035819_P001	Maize	extracellular	22.73	39.74
Zm00001d009478_P001	Maize	extracellular	22.35	38.31
PGSC0003DMT400064939	Potato	nucleus	58.33	38.21
VIT_05s0094g00950.t01	Wine grape	cytosol, plastid	57.95	37.59
AT1G05690.1	Thale cress	plastid	44.7	32.42
Zm00001d046179_P001	Maize	cytosol, endoplasmic reticulum	22.35	31.72
TraesCS3A01G400400.1	Wheat	cytosol	43.94	29.29
TraesCS3B01G433400.1	Wheat	nucleus	43.94	29.0
GSMUA_Achr6P18360_001	Banana	plastid	41.29	28.53
CDX86561	Canola	nucleus	45.08	28.4
CDY15554	Canola	nucleus	45.08	28.07
Os01t0893400-01	Rice	nucleus	42.05	26.88
OQU88021	Sorghum	nucleus	43.18	26.82
CDY10140	Canola	plastid	37.12	26.7
HORVU3Hr1G090000.4	Barley	nucleus	43.18	26.64
Bra030621.1-P	Field mustard	endoplasmic reticulum	45.08	25.87
PGSC0003DMT400055194	Potato	nucleus	35.23	24.6
Zm00001d042549_P001	Maize	nucleus	38.64	23.34
PGSC0003DMT400069397	Potato	nucleus	26.52	21.02
PGSC0003DMT400039384	Potato	nucleus	26.52	20.29
PGSC0003DMT400069392	Potato	nucleus	26.52	20.06

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:102600907	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	UniProt:M1A387	PFAM:PF00651
EnsemblPlantsGene:PGSC0003DMG400005366	PGSC:PGSC0003DMG400005366	EnsemblPlants:PGSC0003DMT400013718	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF140
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	InterPro:SPOP_C	SUPFAM:SSF54695	UniParc:UPI0002963F29	RefSeq:XP_006365946.1
SEG:seg	:	:	:	:	:

Description

BTB and TAZ domain protein 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400005366]

Coordinates

chr12:-:13088203..13089850

Molecular Weight (calculated)

29941.1 Da

IEP (calculated)

7.040

GRAVY (calculated)

-0.205

Length

264 amino acids

Sequence
(BLAST)

001: MASPEIDYPR LSSGSESFGG CFNIRIEGED SRHTLDFHED RKCPVYNARN IPEPPPPPGK ICLKSITHER GHGKSDRVPN ETRDTWDKLF KDGYGADVHI
101: STDNGSFILA HSTLLRIASP ILGNLLQQSK VKNGIRSIKI LGVPHDAVFI FIRFLYSACY EEREMKKFVL HLLVLSHSYS VPSLKRVCIH LLEQGWLSPE
201: NVIDVLQLGR NCDVPRLIVV CIRMIVRNFI TISSSEGWEV MRRANPMLEQ ELVEYVVDAD SITQ

Best Arabidopsis Sequence Match ( AT1G05690.1 )
(BLAST)

001: MSSSTKNIPK PPPLPCITYQ RFQSSTRKPS SLMRLVPKEA LETWDKLFKE GSGADTYVET DNKSHFPAHS SVLAAASPVI ATLLNQSRDK NGNTYLKIHG
101: VPCEAVYMFI RFLYSSCYEE EEMKKFVLHL LVLSHCYSVP SLKRLCVEIL DQGWINKENV IDVLQLARNC DVTRICFVCL SMVIKDFKSV SSTEGWKVMK
201: RSNPLLEQEL IEAVIESDSR KQERRRKLEE REVYLQLYEA MEALVHICRE GCGTIGPRDK ALKGSHTVCK FPACKGLEGA LRHFLGCKSR ASCSHCKRMW
301: QLLQLHSCIC DDSNSCKVSL CWNFKEKMKK LSKKEQSKWR LLVENIIRAR NSLGPFSSRS SGLI

Arabidopsis Description

BT3BTB/POZ and TAZ domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYL0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.