Factsheet for VIT_17s0000g09790.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02230.t01
VIT_14s0171g00380.t01
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48360.1	VIT_01s0026g02230.t01	AT1G26830.1	15772280
AT3G48360.1	VIT_18s0072g01030.t01	AT1G35670.1	19130088
AT3G48360.1	VIT_14s0171g00380.t01	AT3G01770.1	15316289
AT3G48360.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088
AT5G63160.1	VIT_01s0026g02230.t01	AT1G26830.1	15772280
AT5G63160.1	VIT_14s0171g00380.t01	AT3G01770.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069397	Potato	nucleus	65.13	67.87
Solyc06g071820.2.1	Tomato	nucleus	66.86	66.48
PGSC0003DMT400039384	Potato	nucleus	65.99	66.38
Solyc03g111710.2.1	Tomato	nucleus	65.13	65.51
KRH57174	Soybean	cytosol	40.06	62.9
Solyc06g071830.2.1	Tomato	nucleus	59.94	62.46
PGSC0003DMT400069392	Potato	nucleus	62.25	61.89
KRH03892	Soybean	cytosol	61.1	61.27
KRH63672	Soybean	nucleus	57.64	61.16
CDY41504	Canola	nucleus	57.35	59.94
AT5G63160.1	Thale cress	nucleus	61.67	58.63
Bra029235.1-P	Field mustard	nucleus	61.96	58.42
Bra038612.1-P	Field mustard	nucleus	60.52	57.85
CDX84392	Canola	nucleus	59.94	57.46
CDY70710	Canola	nucleus	25.94	57.32
CDY48173	Canola	nucleus	59.37	56.75
AT3G48360.1	Thale cress	nucleus	59.37	56.59
Bra018065.1-P	Field mustard	nucleus	59.94	55.03
CDY45741	Canola	nucleus	62.25	54.41
CDY39576	Canola	nucleus	56.77	53.68
CDY30743	Canola	nucleus	61.38	53.65
KRH37914	Soybean	cytosol	14.7	51.0
GSMUA_Achr11P...	Banana	nucleus	49.86	48.73
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	49.28	48.44
GSMUA_AchrUn_...	Banana	nucleus	47.84	48.26
GSMUA_Achr9P02050_001	Banana	cytosol	45.82	46.63
HORVU3Hr1G092090.3	Barley	mitochondrion, nucleus	25.94	45.69
Zm00001d042443_P001	Maize	cytosol	45.24	45.64
GSMUA_Achr6P12110_001	Banana	nucleus	44.96	45.09
TraesCS3A01G413600.1	Wheat	cytosol, plastid	44.96	44.83
EES01931	Sorghum	cytosol	44.67	44.41
TraesCS3D01G408100.1	Wheat	cytosol, plastid	44.67	44.41
TraesCS3B01G448000.1	Wheat	cytosol, plastid	44.09	44.22
Os01t0908200-01	Rice	cytosol	43.8	43.8
TraesCS3D01G408000.1	Wheat	plastid	44.38	43.63
TraesCS3B01G448100.1	Wheat	plastid	44.09	43.47
HORVU2Hr1G083410.1	Barley	cytosol	9.8	42.5
TraesCS3A01G413700.1	Wheat	cytosol, plastid	42.36	41.88
TraesCS2A01G323000.1	Wheat	cytosol	40.63	41.59
TraesCS2D01G339900.1	Wheat	cytosol	40.35	41.3
TraesCS2B01G359600.1	Wheat	cytosol	40.06	41.0
TraesCS2B01G359400.1	Wheat	cytosol	40.35	40.46
Zm00001d025707_P001	Maize	cytosol	39.48	40.18
GSMUA_Achr6P12420_001	Banana	nucleus	42.36	39.52
TraesCS2A01G323200.1	Wheat	cytosol	39.19	39.31
EES11006	Sorghum	cytosol, endoplasmic reticulum, nucleus	40.63	38.95
Os04t0482300-01	Rice	cytosol	39.77	38.87
VIT_07s0129g00210.t01	Wine grape	cytosol, nucleus, plastid	39.77	37.2
TraesCS2D01G339700.1	Wheat	cytosol	40.06	36.68
EES05370	Sorghum	plastid	36.6	35.67
VIT_05s0094g00950.t01	Wine grape	cytosol, plastid	41.5	35.38
Zm00001d017101_P001	Maize	plastid	36.6	34.42
HORVU2Hr1G083430.3	Barley	nucleus	14.7	29.14
HORVU2Hr1G083490.1	Barley	extracellular	6.34	25.29
Os02t0596700-00	Rice	plastid	14.99	17.45

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	EntrezGene:100260390	wikigene:100260390	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4
Gene3D:3.30.710.10	InterPro:BTB/POZ_dom	ProteinID:CBI14900	ProteinID:CBI14900.3	UniProt:D7SHE1	EMBL:FN594950
GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019005
GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR000197
InterPro:IPR000210	InterPro:IPR035898	EntrezGene:LOC100260390	wikigene:LOC100260390	PFAM:PF00651	PFAM:PF02135
PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF75	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00551
InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933	InterPro:TAZ_dom_sf	TIGR:TC53008	TIGR:TC60086
UniParc:UPI0001BE0BE8	ArrayExpress:VIT_17s0000g09790	EnsemblPlantsGene:VIT_17s0000g09790	EnsemblPlants:VIT_17s0000g09790.t01	unigene:Vvi.1048	RefSeq:XP_002278192
RefSeq:XP_002278192.1	InterPro:Znf_TAZ	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:-:11642875..11645632

Molecular Weight (calculated)

39861.8 Da

IEP (calculated)

8.972

GRAVY (calculated)

-0.367

Length

347 amino acids

Sequence
(BLAST)

001: MELASDCDQI SGAIREPDVY IVTSGGLRIP ANASVLASVS PVLENILDRP RKYRRSEKII PILGVPCDAV LAFVRFLYSS WCTDDEMETY GIHLLALSHV
101: FLVPQLKQRC TKGLAKRLTN DNVVDVLQLA RLCDAPDLYI KCMRLISDHF KTVEKTEGWM FLQDHDPHLE LEIMQFMEES ESRKKRSRRR REERCLYLQL
201: SEAMECLEHI CTEGCTSVGP YHLEPTTKKG PCGKFSTCHG LQMLIKHFGT CKKRVNGGCS RCKRMWQLLR LHSSICDQTD LCRVPLCRQF KLKAQQVKKG
301: EDARWKLLVR KVVSAKAMSS LSLPKRKREE EPRQTLDHRH GLGSFRL

Best Arabidopsis Sequence Match ( AT5G63160.1 )
(BLAST)

001: MAITATQNDG VSLNANKISY DLVETDVEII TSGRRSIPAH SGILASVSPV LTNIIEKPRK IHGGSSKKVI KILGVPCDAV SVFVRFLYSP SVTENEMEKY
101: GIHLLALSHV YMVTQLKQRC TKGVGERVTA ENVVDILQLA RLCDAPDLCL KCMRFIHYKF KTVEQTEGWK FLQEHDPFLE LDILQFIDDA ESRKKRRRRH
201: RREQNLYLQL SEAMECIEHI CTEGCTLVGP SSNLDNKSTC QAKPGPCSAF STCYGLQLLI RHFAVCKKRV DGKGCVRCKR MIQLLRLHSS ICDQSESCRV
301: PLCRQYKNRG EKDKKMVEDT KWKVLVRRVA SAKAMSSLSQ SKKKKSEVLF KEEAEDLIRI RNKLM

Arabidopsis Description

BT1BTB/POZ and TAZ domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.