CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37610.1	CDY16196	AT1G26830.1	15772280
AT4G37610.1	CDY45004	AT1G26830.1	15772280
AT4G37610.1	CDY46437	AT1G26830.1	15772280
AT4G37610.1	CDY50732	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29568	Canola	nucleus	93.68	93.93
CDY50978	Canola	nucleus, plastid	84.21	85.56
AT4G37610.1	Thale cress	nucleus	82.11	84.78
CDX75666	Canola	nucleus	83.16	84.49
VIT_07s0129g00210.t01	Wine grape	cytosol, nucleus, plastid	53.68	54.99
CDY36495	Canola	cytosol	53.95	53.95
CDY08721	Canola	cytosol	53.68	53.68
Solyc02g092460.2.1	Tomato	mitochondrion, nucleus	38.68	51.22
KRH77116	Soybean	plastid	51.05	51.19
GSMUA_Achr6P24750_001	Banana	nucleus	46.05	46.05
PGSC0003DMT400055194	Potato	nucleus	44.74	44.97
CDY41504	Canola	nucleus	33.42	38.25
CDY10140	Canola	plastid	35.79	37.06
CDX84392	Canola	nucleus	33.68	35.36
CDY48173	Canola	nucleus	33.68	35.26
CDY39576	Canola	nucleus	33.68	34.88
CDY70710	Canola	nucleus	14.21	34.39
CDX86561	Canola	nucleus	37.89	34.37
CDY15554	Canola	nucleus	37.89	33.96
CDY45741	Canola	nucleus	35.26	33.75
CDY30743	Canola	nucleus	34.47	33.0

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	GO:A0A078C6F3
InterPro:BTB/POZ_dom	EnsemblPlants:CDX72641	ProteinID:CDX72641	ProteinID:CDX72641.1	GO:GO:0003674	GO:GO:0003712
GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00100199001	InterPro:IPR000197	InterPro:IPR000210	InterPro:IPR035898	PFAM:PF00651
PFAM:PF02135	PFscan:PS50097	PFscan:PS50134	PANTHER:PTHR24413	PANTHER:PTHR24413:SF145	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933	InterPro:TAZ_dom_sf
UniParc:UPI0001B64000	InterPro:Znf_TAZ	SEG:seg	:	:	:

Description

BnaC07g46630D

Coordinates

chrLK031796:-:2333333..2335024

Molecular Weight (calculated)

43273.5 Da

IEP (calculated)

8.621

GRAVY (calculated)

-0.367

Length

380 amino acids

Sequence
(BLAST)

001: MKNINVYSPE CSPVNVSLPP PPPPPVKSNS GTELKKSTDM LLQKCNSFAS KATRDSWDRM FDEAHGADVL IHTDDNGLIY AHSNVIAMAS DVIRGMVKQD
101: KKKPHRKSIS ILGVPHDAVR VFIRFLYSSC YEKQDMEDFA IHILVLSHVY VVPHLKRVCE SHFENTLLNK ENVIDVFQLA LLCDAPRLAL LCHRMILNSF
201: EEVSTSEGWQ AMKQSHPSLQ KELLRSVSYE LNSLKQKSRK QKEIQTYTQL YDAMEAFVHI CRDGCREIGP TKIENPHASC GFQACNGLEQ LLKHMAGCKL
301: RSIPGGCSRC KRMWQLLELH SRICVDSEQC RVPLCGDFNE RMKKQSRKDE KRWKLLVKNV LSTKRIGGSP YFLEAIDVTL

Best Arabidopsis Sequence Match ( AT4G37610.1 )
(BLAST)

001: MENMDDFSPE NVLAPPPPPP PMKKSTDLFM QRSNSFVSKA TRDSWDRMFD EAHGADVLIH TDDNGLIYAH SNVIGMASDV IRGMMKQHKR KSHRKSISIL
101: GVPHHALRVF IRFLYSSCYE KQDMEDFAIH LLVLSHVYVV PHLKRVCESE FESSLLNKEN VIDVFQLALL CDAPRLGLLC HRMILNNFEE VSTSEGWQAM
201: KESHPRLQKE LLRSVAYELN SLKQRNRKQK EIQTYTQLYE AMEAFVHICR DGCREIGPTK TETPHMSCGF QACNGLEQLL KHLAGCKLRS IPGGCSRCKR
301: MWQLLELHSR ICVDSEQCKV PLCSSLKERM KTQSRKDEKR WKLLVRNVLS TKRIGGSPFF LQAIDVTL

Arabidopsis Description

BT5BTB/POZ and TAZ domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6EJ98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.