Factsheet for GSMUA_Achr6P24750_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P18000_001
GSMUA_Achr8P16990_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37610.1	GSMUA_Achr7P18000_001	AT1G26830.1	15772280
AT4G37610.1	GSMUA_Achr8P16990_001	AT1G26830.1	15772280
AT4G37610.1	GSMUA_AchrUn_...	AT1G26830.1	15772280
AT4G37610.1	GSMUA_AchrUn_...	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092460.2.1	Tomato	mitochondrion, nucleus	46.05	60.98
VIT_07s0129g00210.t01	Wine grape	cytosol, nucleus, plastid	55.0	56.33
AT5G67480.2	Thale cress	cytosol	53.95	53.52
PGSC0003DMT400055194	Potato	nucleus	52.37	52.65
CDY36495	Canola	cytosol	52.63	52.63
Bra024446.1-P	Field mustard	cytosol	52.11	52.11
CDY08721	Canola	cytosol	52.11	52.11
KRH77116	Soybean	plastid	50.79	50.92
GSMUA_Achr6P18360_001	Banana	plastid	50.0	49.74
AT4G37610.1	Thale cress	nucleus	46.32	47.83
CDY50978	Canola	nucleus, plastid	46.32	47.06
CDY29568	Canola	nucleus	46.32	46.44
Bra017839.1-P	Field mustard	nucleus	46.32	46.44
CDX75666	Canola	nucleus	45.53	46.26
Bra011776.1-P	Field mustard	nucleus, plastid	45.53	46.26
CDX72641	Canola	nucleus, plastid	46.05	46.05
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	34.47	37.11
GSMUA_AchrUn_...	Banana	nucleus	33.16	36.63
GSMUA_Achr11P...	Banana	nucleus	33.68	36.06
GSMUA_Achr9P02050_001	Banana	cytosol	31.84	35.48
GSMUA_Achr6P12110_001	Banana	nucleus	31.05	34.1
GSMUA_Achr6P12420_001	Banana	nucleus	31.58	32.26

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G24750_001	EnsemblPlants:GSMUA_Achr6P24750_001
EnsemblPlants:GSMUA_Achr6T24750_001	InterPro:IPR000197	InterPro:IPR000210	InterPro:IPR035898	UniProt:M0T9X1	PFAM:PF00651
PFAM:PF02135	PFscan:PS50097	PFscan:PS50134	PANTHER:PTHR24413	PANTHER:PTHR24413:SF145	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933	InterPro:TAZ_dom_sf
UniParc:UPI000295FE80	InterPro:Znf_TAZ	SEG:seg	:	:	:

Description

BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G24750_001]

Coordinates

chr6:-:25596119..25597571

Molecular Weight (calculated)

43170.1 Da

IEP (calculated)

8.967

GRAVY (calculated)

-0.145

Length

380 amino acids

Sequence
(BLAST)

001: MADQRWEMSI HRCCPQPPSV LSLAATSNNC ERLAKHSCCM ADNLTRDLLH RLFADGYRAD VGVYTNDGII LAHASILGMA SPVIKTMLKQ SKRRGGRRRA
101: ISIRGVPHNA VRIFLRFLYT SCYEEEEMNE FVLHLLVLSH AFVIPSLKMV CVQQLERGLL TTENAVDALQ LARLCDAPRL CLLCHRLIVK QFKEVSASGG
201: WKVMRQSDPV LEKELLESVI DDDSSKIERV RKIEERKIYL QLHEAMEALV HICRDGCRTI GPHDKVLKQN AAPCNFPACK GLEALVRHFA GCKNRVLGGC
301: THCKRMWQLL ELHSRLCSQV DGCKVPLCRH FKERLRQQSK KDEVKWKLLV SKVLEAADFS RARVHSSVVV VCTQPQLTFH

Best Arabidopsis Sequence Match ( AT5G67480.3 )
(BLAST)

001: MVTGCVDLHQ SFKSADSSSV PIPPPLPSKS DGLKKKLGHS SVSTATRDMW DRLFNDGYKA DVVIYTDNGS IIYAHANILG TASTVIKGML KQAKRHGKWH
101: TISIRGVPHD AVRVFIRFLY SSCYEKEEMN EFIMHLLLLS HAYVVPQLKR VCEWHLEHGL LTTENVVDVF QLALLCDFPR LSLISHRMIM KHFNELSATE
201: AWTAMKKSHP FLEKEVRDSV IIEANTRKER MRKRNDQRIY SQLYEAMEAL VHICRDGCKT IGPHDKDFKP NHATCNYEAC KGLESLIRHF AGCKLRVPGG
301: CVHCKRMWQL LELHSRVCAG SDQCRVPLCR NLKEKMEKQS KKDESRWKLL VKNVLGSKKI GGSPFFLPVT NC

Arabidopsis Description

BT4BTB and TAZ domain protein 4 [Source:TAIR;Acc:AT5G67480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.