Factsheet for VIT_03s0097g00570.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65630.1	VIT_17s0000g07580.t01	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10646	Soybean	nucleus	62.14	64.84
KRH10648	Soybean	nucleus	62.32	64.18
KRH21702	Soybean	nucleus	61.23	63.65
PGSC0003DMT400008041	Potato	nucleus	60.14	55.15
Solyc01g106280.2.1	Tomato	nucleus	59.78	54.82
CDY08771	Canola	nucleus	33.88	52.82
CDX78390	Canola	nucleus	21.56	49.79
CDX70356	Canola	nucleus, plastid	22.1	49.39
CDY65645	Canola	nucleus, plastid	44.75	48.53
GSMUA_Achr3P00480_001	Banana	nucleus	44.38	46.93
GSMUA_Achr1P15650_001	Banana	nucleus	41.3	46.34
Bra024402.1-P	Field mustard	nucleus, plastid	44.75	45.32
OQU82367	Sorghum	nucleus	23.91	43.71
AT5G10550.1	Thale cress	nucleus	45.29	43.03
AT5G65630.1	Thale cress	nucleus	45.83	42.88
Zm00001d046528_P001	Maize	cytosol	11.59	42.67
Bra006068.1-P	Field mustard	nucleus	42.21	42.44
Os04t0622800-00	Rice	cytosol	23.73	42.12
CDY65656	Canola	cytosol	15.58	41.55
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	32.97	39.91
Zm00001d002267_P001	Maize	plastid	32.61	39.91
TraesCS2B01G489500.1	Wheat	plastid	33.15	39.52
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	33.15	39.19
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	33.15	38.94
Os08t0192800-01	Rice	nucleus	33.7	38.67
Bra005311.1-P	Field mustard	cytosol, plastid	16.12	38.2
Zm00001d026333_P001	Maize	cytosol	31.52	36.94
KXG24660	Sorghum	plastid	32.25	36.18
Zm00001d049400_P001	Maize	plastid	31.7	36.16
Zm00001d024251_P001	Maize	cytosol	30.43	34.5
VIT_19s0014g01650.t01	Wine grape	nucleus	34.6	31.99
CDX70357	Canola	plastid	20.83	29.26
VIT_12s0028g02510.t01	Wine grape	nucleus	34.42	29.05
VIT_17s0000g01830.t01	Wine grape	nucleus	31.88	23.31
VIT_13s0019g03950.t01	Wine grape	nucleus	15.94	22.8
VIT_14s0171g00380.t01	Wine grape	nucleus	27.9	20.9
VIT_10s0003g02240.t01	Wine grape	nucleus	16.85	16.23

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100245782	wikigene:100245782	MapMan:15.5.54	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ProteinID:CCB58922	ProteinID:CCB58922.1	ncoils:Coil	UniProt:F6HW58	EMBL:FN596261
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	EntrezGene:LOC100245782	wikigene:LOC100245782	InterPro:NET_dom	InterPro:NET_sf
PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880
PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000210A1C3	ArrayExpress:VIT_03s0097g00570	EnsemblPlantsGene:VIT_03s0097g00570
EnsemblPlants:VIT_03s0097g00570.t01	RefSeq:XP_003631709	RefSeq:XP_003631709.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:10961496..10963639

Molecular Weight (calculated)

60272.7 Da

IEP (calculated)

9.782

GRAVY (calculated)

-0.837

Length

552 amino acids

Sequence
(BLAST)

001: MASAVLASRN ESNWAQSRGG GGGGGGGGFM GKFHSSNPNP NNSKRKTHAP AGDINDLSPA VTQSASDDAS SFNQRSIVEF NRGRYVTFNI GSYSRKDLVQ
101: LKNRLVSELE KIQNLSNRIE SGDLQLRSGG DRTANKQQRP NNKKIAGNKR PPPFDSGRGP KRSAAENASL MKLCGQTLTK LMKHKHSWVF NSPVDVVGMG
201: LHDYHQIIKR PMDLGTVKSK IAKNLYDSPL DFAADVRLTF DNALLYNPKG HDVHVMAEQL LARFEDLFKP VYNKLEEDER DQERIIVGEL QGSSWNHIPT
301: PERLKKPSPK PVAKKPERMQ VPIPATGSSN PPSVQSVPTP SPMRAPPVKP LATRPSSGKQ PKPKAKDPNK REMSLEEKHK LGLGLQSLPQ EKMDQVVQII
401: SKKNGHLTQD GDEIELDIEA VDTETLWELD RLVTNWKKMV SKIKRQALMV NNNTAATEVN RSSMNERTEP SLAPAMAKKP KKGEAGEEDV DIGDEIPTAT
501: FPPVEIEKDD ARASSSSSSS SSSSSDSSSS SDSDSGSSSG SDSDVDNAQS RP

Best Arabidopsis Sequence Match ( AT5G10550.1 )
(BLAST)

001: MAPAVLANLN EPLFLGQCGA VFMRKYTNQP LSGDINNPLF NPNPNPNSIS AYGNNSSKHF DDSSAYGDYV SFDLDGYTSN QLRELKKRLN SELEEVRFLR
101: ERIESGTFVS GSVYTTQARS FAGETNDVGV KKTKTKKKKI GHGQKRSNPF ATDEPSLKRH VALDLMSEKV LKSMMTTCGQ ILVKLMKHKW SWVFLNPVDV
201: VGLGLHDYHR IVDKPMDLGT VKMNLEKGLY RSPIDFASDV RLTFTNAMSY NPKGQDVYLM AEKLLSQFDV WFNPTLKRFE AQEVKVMGSS SRPGPEDNQR
301: VWNQNNVAEN ARKGPEQISI AKKLDSVKPL LPTLPPPPVI EITRDPSPPP SPVQPPPPPS PPPQPVNQVE ASLEVRETNK GRKGKLPKPK AKDPNKREMT
401: MDEKGKLGVN LQELPPEKLG QLIQILRKRT RDLPQDGDEI ELDIEALDNE TLWELDRFVT NYRKMASKIK RQGFIQNVST PPRNMPPVTE MGSAEKRGRK
501: GGEAGEEDVD IGEDIPVEDY PSVEIERDGT AAAASGGSSS SGSFSSSGSS SSSDSESGSS SGSDSDADSV QSPFVEAKEA P

Arabidopsis Description

GTE2Transcription factor GTE2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.