Factsheet for Os04t0622800-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	91.64	62.5
Zm00001d046528_P001	Maize	cytosol	29.58	61.33
OQU82367	Sorghum	nucleus	58.2	59.93
Zm00001d002267_P001	Maize	plastid	68.17	47.01
TraesCS2B01G489500.1	Wheat	plastid	69.77	46.87
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	69.45	46.25
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	69.77	46.17
Zm00001d026333_P001	Maize	cytosol	67.85	44.8
Os08t0192800-01	Rice	nucleus	55.95	36.17
CDY08771	Canola	nucleus	34.41	30.23
CDY65656	Canola	cytosol	19.94	29.95
Os01t0648700-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	21.86	28.57
Bra005311.1-P	Field mustard	cytosol, plastid	19.29	25.75
CDX70356	Canola	nucleus, plastid	19.94	25.1
CDX78390	Canola	nucleus	18.97	24.69
KRH10648	Soybean	nucleus	41.8	24.25
GSMUA_Achr1P15650_001	Banana	nucleus	38.26	24.19
KRH21702	Soybean	nucleus	41.16	24.11
KRH10646	Soybean	nucleus	40.84	24.01
GSMUA_Achr3P00480_001	Banana	nucleus	39.87	23.75
VIT_03s0097g00570.t01	Wine grape	nucleus	42.12	23.73
CDY65645	Canola	nucleus, plastid	37.3	22.79
Os01t0214300-01	Rice	cytosol, nucleus	11.9	22.29
Os06t0138000-01	Rice	cytosol, nucleus	8.68	21.77
Bra024402.1-P	Field mustard	nucleus, plastid	37.94	21.65
PGSC0003DMT400008041	Potato	nucleus	41.48	21.43
Solyc01g106280.2.1	Tomato	nucleus	40.84	21.1
Bra006068.1-P	Field mustard	nucleus	36.98	20.95
AT5G65630.1	Thale cress	nucleus	38.26	20.17
AT5G10550.1	Thale cress	nucleus	36.66	19.62
Solyc02g091660.2.1	Tomato	nucleus	33.12	19.25
PGSC0003DMT400078795	Potato	nucleus	35.05	18.41
Os02t0250300-01	Rice	nucleus	34.08	16.16
CDX70357	Canola	plastid	19.29	15.27
Os02t0601800-03	Rice	nucleus	26.69	11.62
Os07t0507700-01	Rice	nucleus	17.68	9.15
Os08t0127300-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	UniProt:A0A0N7KJQ5	ProteinID:BAS91073.1	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487
InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	EnsemblPlantsGene:Os04g0622800
EnsemblPlants:Os04t0622800-00	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF162	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI00039396DB	SEG:seg

Description

Similar to bromodomain containing protein. (Os04t0622800-00)

Coordinates

chr4:-:31646261..31649090

Molecular Weight (calculated)

34769.5 Da

IEP (calculated)

5.175

GRAVY (calculated)

-0.494

Length

311 amino acids

Sequence
(BLAST)

001: MRKRCDQILA KLRKDKRSIW FNAPVEVDRL GLQDYHAVIK CPMDLGTVRA NLAAGRYPSH DDFAADIRLT FSNALRYNPA GHEVHTFAGD LLASFEKMYK
101: ASVSWFEQEL KILEPPMPVP PPELPPAKAP AQVKPRAGNV KMRKTKAREP NKREMTLEEK NLLRVGLESL PEEKMHNVLQ IVRKRNGNPE LVGGEIELDI
201: DEMDVETQWE LDRFVNKFKK ALNKSRRAAI VNGENADVID ASVANDSDML VNGSTATMVD NGDVTMAIES KDPDKITTQA EQLDEYVDAV ADPEFLSWIM
301: SGTGPGDLVS A

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.