Factsheet for Solyc02g091660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65630.1	Solyc03g113720.2.1	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078795	Potato	nucleus	88.78	80.24
CDY08771	Canola	nucleus	30.28	45.76
CDX78390	Canola	nucleus	18.69	41.84
CDX70356	Canola	nucleus, plastid	19.07	41.3
CDY65645	Canola	nucleus, plastid	35.51	37.33
Bra024402.1-P	Field mustard	nucleus, plastid	37.57	36.88
Bra006068.1-P	Field mustard	nucleus	37.76	36.79
CDY65656	Canola	cytosol	14.21	36.72
AT5G65630.1	Thale cress	nucleus	40.0	36.27
AT5G10550.1	Thale cress	nucleus	38.5	35.46
Bra005311.1-P	Field mustard	cytosol, plastid	14.77	33.91
OQU82367	Sorghum	nucleus	19.07	33.77
GSMUA_Achr3P00480_001	Banana	nucleus	32.71	33.52
Os04t0622800-00	Rice	cytosol	19.25	33.12
GSMUA_Achr1P15650_001	Banana	nucleus	29.53	32.11
Zm00001d002267_P001	Maize	plastid	25.98	30.82
Os08t0192800-01	Rice	nucleus	27.48	30.56
Solyc01g106280.2.1	Tomato	nucleus	34.21	30.4
TraesCS2B01G489500.1	Wheat	plastid	25.23	29.16
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	24.67	28.95
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	25.23	28.91
Zm00001d026333_P001	Maize	cytosol	25.05	28.45
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	24.86	28.3
KXG24660	Sorghum	plastid	25.42	27.64
Zm00001d049400_P001	Maize	plastid	24.86	27.48
Zm00001d024251_P001	Maize	cytosol	24.11	26.49
Zm00001d046528_P001	Maize	cytosol	7.29	26.0
CDX70357	Canola	plastid	19.07	25.95
Solyc09g090370.2.1	Tomato	nucleus	14.58	22.54
Solyc10g008070.2.1	Tomato	nucleus	14.95	22.1
Solyc09g015660.2.1	Tomato	cytosol	13.08	19.39
Solyc12g014170.1.1	Tomato	nucleus	24.3	18.54
Solyc07g062660.2.1	Tomato	nucleus	25.98	18.48
Solyc03g111090.2.1	Tomato	nucleus	25.79	17.67
Solyc02g093880.2.1	Tomato	nucleus	21.31	15.72
Solyc02g071510.2.1	Tomato	nucleus	16.45	14.99

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427
InterPro:IPR038336	UniProt:K4BCW4	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035
PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297
SUPFAM:SSF47370	EnsemblPlantsGene:Solyc02g091660.2	EnsemblPlants:Solyc02g091660.2.1	UniParc:UPI0002767B62	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:52903040..52905431

Molecular Weight (calculated)

59965.9 Da

IEP (calculated)

6.564

GRAVY (calculated)

-0.699

Length

535 amino acids

Sequence
(BLAST)

001: MSHLQQVNEP LPRAAPSPAI MATSKVPFNW KPNAVDGTDL FHREYVVFNL ASYSRSELKD LKKMLSSELD RVQGLLDRIE TQDFVPRTSF HAREVIQPPM
101: APWPQSALAP NASRQHREPV LIGKKSKKHT GQKRPRTIDL GKDLVVEGDK FFVNMMKTCR QILGKIMKKK YGRVFNAPVD VKGLNLYDYH DFIKHPMDLG
201: TVKSRLDKNV YRTPQDFAAD VRLTFTNAMT YNPKGQHVHN LAEEYLGIFE EMFKPAYEKY EAEHHKVATI MQQVHQQMNL SQPAPNTKLP PLPVAKKSGS
301: ARSHSTLLNQ HQSHIHSFSE PVAPLFATPA SKSPPQPVVE MPRSARTSKL KVKDPNKRLM TEGERDKLGN ELQNLPPENM EHVLQLVKRK FPNLTEEGNE
401: VELDLEIIDN ETLWELYRYV ISDKESMSKI ERSGVTENAA AVLLNKSPEK APTPEHAKPE INEVDVVEED VDIGEEIPGE NFPPVHIDKD PSSSSGSSSG
501: SDSSSGDSGS SSESDSDEDS VQSPYVEAAK EAPAT

Best Arabidopsis Sequence Match ( AT5G10550.1 )
(BLAST)

001: MAPAVLANLN EPLFLGQCGA VFMRKYTNQP LSGDINNPLF NPNPNPNSIS AYGNNSSKHF DDSSAYGDYV SFDLDGYTSN QLRELKKRLN SELEEVRFLR
101: ERIESGTFVS GSVYTTQARS FAGETNDVGV KKTKTKKKKI GHGQKRSNPF ATDEPSLKRH VALDLMSEKV LKSMMTTCGQ ILVKLMKHKW SWVFLNPVDV
201: VGLGLHDYHR IVDKPMDLGT VKMNLEKGLY RSPIDFASDV RLTFTNAMSY NPKGQDVYLM AEKLLSQFDV WFNPTLKRFE AQEVKVMGSS SRPGPEDNQR
301: VWNQNNVAEN ARKGPEQISI AKKLDSVKPL LPTLPPPPVI EITRDPSPPP SPVQPPPPPS PPPQPVNQVE ASLEVRETNK GRKGKLPKPK AKDPNKREMT
401: MDEKGKLGVN LQELPPEKLG QLIQILRKRT RDLPQDGDEI ELDIEALDNE TLWELDRFVT NYRKMASKIK RQGFIQNVST PPRNMPPVTE MGSAEKRGRK
501: GGEAGEEDVD IGEDIPVEDY PSVEIERDGT AAAASGGSSS SGSFSSSGSS SSSDSESGSS SGSDSDADSV QSPFVEAKEA P

Arabidopsis Description

GTE2Transcription factor GTE2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.