Factsheet for Bra020610.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010132.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28490.1	Bra010132.1-P	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52505	Canola	nucleus, plastid	99.48	99.48
AT5G28490.1	Thale cress	nucleus, plastid	93.72	94.21
Bra036134.1-P	Field mustard	nucleus, plastid	89.53	89.06
Bra009997.1-P	Field mustard	plastid	89.01	88.54
Bra040188.1-P	Field mustard	nucleus, plastid	80.63	78.17
Bra001109.1-P	Field mustard	nucleus, plastid	74.87	75.26
GSMUA_Achr11P...	Banana	nucleus	36.13	73.4
KRH34151	Soybean	plastid	63.35	68.75
Zm00001d025863_P001	Maize	nucleus	59.69	67.86
Bra023738.1-P	Field mustard	plastid	60.73	65.91
VIT_14s0036g00540.t01	Wine grape	plastid	65.44	65.44
KRG97044	Soybean	plastid	62.3	65.03
KRG92633	Soybean	nucleus	63.35	63.68
KRH68792	Soybean	plastid	60.21	62.5
PGSC0003DMT400060169	Potato	nucleus, plastid	67.54	61.72
Bra018337.1-P	Field mustard	cytosol	52.88	61.21
Solyc05g055020.2.1	Tomato	nucleus	67.54	61.14
Solyc04g009980.2.1	Tomato	nucleus, plastid	57.59	61.11
Bra014935.1-P	Field mustard	plastid	62.83	60.3
PGSC0003DMT400029945	Potato	nucleus	57.07	59.56
EES11114	Sorghum	nucleus	61.26	58.79
GSMUA_Achr5P18640_001	Banana	nucleus	52.88	58.72
Zm00001d003057_P001	Maize	nucleus	61.26	58.5
HORVU2Hr1G089190.1	Barley	nucleus	60.73	58.29
TraesCS2D01G378900.1	Wheat	nucleus	60.73	57.71
TraesCS6B01G256500.1	Wheat	nucleus	60.21	57.5
Bra004711.1-P	Field mustard	nucleus	50.26	57.48
TraesCS2B01G399800.1	Wheat	nucleus	60.21	57.21
TraesCS2A01G382500.1	Wheat	nucleus	60.21	57.21
Os04t0516200-01	Rice	nucleus	60.21	56.93
TraesCS6A01G225000.1	Wheat	nucleus	60.21	56.93
TraesCS6D01G209700.1	Wheat	nucleus	60.21	56.93
Bra018263.1-P	Field mustard	nucleus	63.87	56.74
Zm00001d051143_P001	Maize	nucleus	59.69	56.44
Os10t0478000-01	Rice	nucleus	60.21	56.37
HORVU6Hr1G058340.2	Barley	nucleus	60.21	56.37
Bra021707.1-P	Field mustard	nucleus	63.87	56.22
Zm00001d017263_P001	Maize	nucleus	59.69	55.88
Bra020365.1-P	Field mustard	nucleus	52.88	55.8
KXG30661	Sorghum	nucleus	60.73	55.77
GSMUA_Achr5P14570_001	Banana	nucleus	50.26	55.49
GSMUA_Achr5P03870_001	Banana	nucleus	50.26	55.49
TraesCS1B01G172100.1	Wheat	nucleus	59.69	55.34
TraesCS1D01G153700.1	Wheat	nucleus	59.69	55.34
Zm00001d014032_P001	Maize	nucleus	60.73	55.24
Bra016865.1-P	Field mustard	nucleus	50.79	55.11
Os02t0623400-00	Rice	nucleus	60.21	55.02
Bra000269.1-P	Field mustard	nucleus	50.79	54.8
GSMUA_Achr1P09270_001	Banana	nucleus	49.21	54.65
Zm00001d032696_P001	Maize	nucleus	60.73	54.46
GSMUA_Achr4P21940_001	Banana	nucleus	49.74	54.29
GSMUA_AchrUn_...	Banana	nucleus	43.46	53.9
GSMUA_Achr1P05650_001	Banana	nucleus	45.55	53.05
Bra002642.1-P	Field mustard	nucleus, plastid	50.79	53.01
Bra015551.1-P	Field mustard	nucleus, plastid	54.45	52.53
Bra031552.1-P	Field mustard	nucleus	53.93	52.02
KXG38327	Sorghum	nucleus	60.73	52.02
GSMUA_Achr4P28760_001	Banana	nucleus	49.74	51.91
Bra035066.1-P	Field mustard	nucleus	50.26	50.53
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	49.21	50.27
HORVU1Hr1G041240.5	Barley	nucleus	59.69	50.22
GSMUA_Achr6P36540_001	Banana	nucleus	41.88	49.69
Bra008382.1-P	Field mustard	nucleus	48.69	48.69
Bra021995.1-P	Field mustard	nucleus	46.07	48.62
Bra040137.1-P	Field mustard	nucleus, plastid	75.39	48.48
Bra021000.1-P	Field mustard	nucleus, plastid	48.69	48.19
TraesCS1A01G154900.1	Wheat	nucleus	59.69	47.3
Zm00001d051966_P001	Maize	nucleus	60.73	47.15
Zm00001d018433_P001	Maize	nucleus	60.21	46.56
Bra013330.1-P	Field mustard	nucleus	47.64	46.43
EES05986	Sorghum	nucleus	60.73	46.22
Os02t0811000-01	Rice	nucleus	59.69	45.97
TraesCS6A01G377300.1	Wheat	nucleus	60.21	45.63
TraesCS6B01G414700.1	Wheat	nucleus	60.21	45.63
TraesCS6D01G361900.1	Wheat	nucleus	60.21	45.63
HORVU6Hr1G088790.1	Barley	nucleus	59.16	44.14
Bra003637.1-P	Field mustard	nucleus	35.6	42.5

Protein Annotations

EnsemblPlants:Bra020610.1	EnsemblPlants:Bra020610.1-P	EnsemblPlantsGene:Bra020610	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF16	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI00025468D3	UniProt:M4DVR6
MapMan:35.1	:	:	:	:	:

Description

AT5G28490 (E=8e-080) LSH1 | LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)

Coordinates

chrA02:+:24224742..24225317

Molecular Weight (calculated)

21823.9 Da

IEP (calculated)

10.449

GRAVY (calculated)

-0.888

Length

191 amino acids

Sequence
(BLAST)

001: MELISQQANK NPNTLTQSTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCVF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFASRAVR LFLREVRDFQ SKARGVSYEK KRKRVNRLKT QTQPPLQLQQ QQEQQPQQGQ SMMANYSGAT V

Best Arabidopsis Sequence Match ( AT5G28490.1 )
(BLAST)

001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV

Arabidopsis Description

LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.