Factsheet for Bra021995.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06030	Canola	nucleus	99.45	99.45
CDX87760	Canola	nucleus	93.92	94.44
CDX77619	Canola	cytosol	41.99	77.55
Bra021000.1-P	Field mustard	nucleus, plastid	72.38	67.88
Bra013330.1-P	Field mustard	nucleus	72.93	67.35
KRH42865	Soybean	plastid	58.56	63.47
VIT_10s0003g01280.t01	Wine grape	nucleus	59.12	61.14
Bra000269.1-P	Field mustard	nucleus	58.01	59.32
Bra004711.1-P	Field mustard	nucleus	54.7	59.28
Bra016865.1-P	Field mustard	nucleus	57.46	59.09
KRH11015	Soybean	nucleus	58.56	58.56
KRH21273	Soybean	nucleus	58.01	58.01
Bra018337.1-P	Field mustard	cytosol	50.28	55.15
PGSC0003DMT400026433	Potato	nucleus	58.01	54.97
Solyc02g076820.2.1	Tomato	plastid	57.46	54.17
Bra023738.1-P	Field mustard	plastid	52.49	53.98
Bra015551.1-P	Field mustard	nucleus, plastid	56.91	52.02
Bra020365.1-P	Field mustard	nucleus	51.38	51.38
Bra035066.1-P	Field mustard	nucleus	53.59	51.05
Bra002642.1-P	Field mustard	nucleus, plastid	50.28	49.73
Bra014935.1-P	Field mustard	plastid	54.14	49.25
Bra008382.1-P	Field mustard	nucleus	51.38	48.69
Bra031552.1-P	Field mustard	nucleus	53.04	48.48
Bra001109.1-P	Field mustard	nucleus, plastid	50.28	47.89
Bra036134.1-P	Field mustard	nucleus, plastid	49.72	46.88
Bra040188.1-P	Field mustard	nucleus, plastid	50.83	46.7
Bra009997.1-P	Field mustard	plastid	49.17	46.35
Bra020610.1-P	Field mustard	nucleus, plastid	48.62	46.07
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	45.86	44.38
Bra003637.1-P	Field mustard	nucleus	36.46	41.25
Bra018263.1-P	Field mustard	nucleus	48.62	40.93
Bra021707.1-P	Field mustard	nucleus	48.62	40.55
Bra040137.1-P	Field mustard	nucleus, plastid	50.28	30.64

Protein Annotations

EnsemblPlants:Bra021995.1	EnsemblPlants:Bra021995.1-P	EnsemblPlantsGene:Bra021995	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF8	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002545B69	UniProt:M4DZP8
MapMan:35.1	:	:	:	:	:

Description

AT4G18610 (E=3e-071) LSH9 | LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)

Coordinates

chrA02:-:18296010..18296555

Molecular Weight (calculated)

20454.9 Da

IEP (calculated)

9.953

GRAVY (calculated)

-0.974

Length

181 amino acids

Sequence
(BLAST)

001: MSSYNTPDQP SSSSNSGHHM PPPVQQQLSR YESQKRRDWN TFLQYLKTLN PPIKISQFDH THVLSFLDYL DQFGKTKVHH QACAFFGQPD PPSPCTCPLK
101: QAWGSLDALI GRLRAAYDEH GGESSDSNPF GNGSIRIHLR EIRESQAKAR GIPYRKKKKR KKTANDPLIS DQERFSNSGG S

Best Arabidopsis Sequence Match ( AT4G18610.1 )
(BLAST)

001: MSSDRHTPTK DPPDHPSSSS NHHKQPLPPQ PQQPLSRYES QKRRDWNTFV QYLKSQNPPL MMSQFDYTHV LSFLRYLDQF GKTKVHHQAC VFFGQPDPPG
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T

Arabidopsis Description

LSH9Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.