Factsheet for Bra018337.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10712	Canola	cytosol, nucleus, plastid	99.39	99.39
Bra015551.1-P	Field mustard	nucleus, plastid	74.55	62.12
Bra031552.1-P	Field mustard	nucleus	73.33	61.11
Bra023738.1-P	Field mustard	plastid	63.64	59.66
Bra020365.1-P	Field mustard	nucleus	61.21	55.8
Bra002642.1-P	Field mustard	nucleus, plastid	61.21	55.19
Bra004711.1-P	Field mustard	nucleus	55.15	54.49
Bra014935.1-P	Field mustard	plastid	64.85	53.77
OQU83235	Sorghum	cytosol	56.97	53.41
Bra016865.1-P	Field mustard	nucleus	56.97	53.41
Bra009997.1-P	Field mustard	plastid	61.82	53.12
Bra000269.1-P	Field mustard	nucleus	56.97	53.11
Bra020610.1-P	Field mustard	nucleus, plastid	61.21	52.88
Bra001109.1-P	Field mustard	nucleus, plastid	60.0	52.11
Bra036134.1-P	Field mustard	nucleus, plastid	60.61	52.08
Bra021995.1-P	Field mustard	nucleus	55.15	50.28
Bra040188.1-P	Field mustard	nucleus, plastid	58.79	49.24
Bra035066.1-P	Field mustard	nucleus	56.36	48.95
Bra021000.1-P	Field mustard	nucleus, plastid	56.97	48.7
Bra013330.1-P	Field mustard	nucleus	57.58	48.47
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	53.94	47.59
Bra018263.1-P	Field mustard	nucleus	61.21	46.98
Bra008382.1-P	Field mustard	nucleus	53.94	46.6
Bra021707.1-P	Field mustard	nucleus	61.21	46.54
GSMUA_Achr10P...	Banana	nucleus	53.94	43.63
GSMUA_Achr8P01890_001	Banana	nucleus	53.33	43.35
TraesCS1B01G235800.1	Wheat	nucleus	69.09	40.28
TraesCS1D01G224100.1	Wheat	nucleus	69.09	40.14
TraesCS1A01G222500.1	Wheat	nucleus	69.09	40.14
Bra003637.1-P	Field mustard	nucleus	38.79	40.0
HORVU1Hr1G060250.1	Barley	nucleus	69.09	39.86
Os05t0347400-01	Rice	nucleus	67.88	39.44
Zm00001d038016_P001	Maize	extracellular	67.27	36.88
Zm00001d010507_P001	Maize	nucleus, plastid	67.27	35.13
EES19345	Sorghum	nucleus, plastid	67.27	34.15
Bra040137.1-P	Field mustard	nucleus, plastid	58.79	32.66

Protein Annotations

EnsemblPlants:Bra018337.1	EnsemblPlants:Bra018337.1-P	EnsemblPlantsGene:Bra018337	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF6	PFAM:PF04852	PFscan:PS51697	UniParc:UPI0002547BB0	UniProt:M4DP96	MapMan:35.1

Description

AT1G07090 (E=2e-069) LSH6 | LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)

Coordinates

chrA05:-:7556192..7556689

Molecular Weight (calculated)

18668.3 Da

IEP (calculated)

10.308

GRAVY (calculated)

-0.618

Length

165 amino acids

Sequence
(BLAST)

001: MEPVTYGSCR PDPKPSTASA PPLSRYESQK RRDWNTFLQY LRNHKPPLTL TLCSGAHVLE FLKYLDQFGK TKVHVTTCFF FGHSDPTSPC ACPHKQAWGS
101: LDSLIGRLRA AYEENGGRPE TNPFAARAVR IYLREVKGSQ AKARGITYQK KRRQPTVTTV RLDVV

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.