Factsheet for Bra023738.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35523	Canola	plastid	98.86	89.23
AT3G23290.2	Thale cress	plastid	93.18	84.1
Bra014935.1-P	Field mustard	plastid	92.05	81.41
GSMUA_Achr11P...	Banana	nucleus	41.48	77.66
Zm00001d025863_P001	Maize	nucleus	65.91	69.05
PGSC0003DMT400044213	Potato	mitochondrion	78.41	67.98
Solyc09g090180.1.1	Tomato	plastid	78.98	66.83
Bra018337.1-P	Field mustard	cytosol	59.66	63.64
TraesCS6B01G256500.1	Wheat	nucleus	70.45	62.0
Os04t0516200-01	Rice	nucleus	71.02	61.88
HORVU2Hr1G089190.1	Barley	nucleus	69.89	61.81
EES11114	Sorghum	nucleus	69.89	61.81
TraesCS2D01G378900.1	Wheat	nucleus	70.45	61.69
GSMUA_Achr5P18640_001	Banana	nucleus	60.23	61.63
Zm00001d003057_P001	Maize	nucleus	69.89	61.5
Bra036134.1-P	Field mustard	nucleus, plastid	67.05	61.46
TraesCS6D01G209700.1	Wheat	nucleus	70.45	61.39
TraesCS6A01G225000.1	Wheat	nucleus	70.45	61.39
TraesCS2B01G399800.1	Wheat	nucleus	69.89	61.19
TraesCS2A01G382500.1	Wheat	nucleus	69.89	61.19
HORVU6Hr1G058340.2	Barley	nucleus	70.45	60.78
Zm00001d017263_P001	Maize	nucleus	70.45	60.78
Bra020365.1-P	Field mustard	nucleus	62.5	60.77
Bra020610.1-P	Field mustard	nucleus, plastid	65.91	60.73
GSMUA_Achr5P03870_001	Banana	nucleus	59.66	60.69
Bra004711.1-P	Field mustard	nucleus	57.39	60.48
Bra009997.1-P	Field mustard	plastid	65.91	60.42
KXG30661	Sorghum	nucleus	71.02	60.1
Bra018263.1-P	Field mustard	nucleus	73.3	60.0
Bra021707.1-P	Field mustard	nucleus	73.86	59.91
GSMUA_Achr1P09270_001	Banana	nucleus	58.52	59.88
GSMUA_Achr5P14570_001	Banana	nucleus	58.52	59.54
Os10t0478000-01	Rice	nucleus	68.75	59.31
Zm00001d014032_P001	Maize	nucleus	70.45	59.05
Zm00001d051143_P001	Maize	nucleus	67.61	58.91
Os02t0623400-00	Rice	nucleus	69.89	58.85
TraesCS1D01G153700.1	Wheat	nucleus	68.75	58.74
TraesCS1B01G172100.1	Wheat	nucleus	68.75	58.74
Zm00001d032696_P001	Maize	nucleus	70.45	58.22
Bra002642.1-P	Field mustard	nucleus, plastid	60.23	57.92
Bra001109.1-P	Field mustard	nucleus, plastid	62.5	57.89
Bra016865.1-P	Field mustard	nucleus	57.39	57.39
GSMUA_Achr1P05650_001	Banana	nucleus	53.41	57.32
GSMUA_Achr4P21940_001	Banana	nucleus	56.82	57.14
Bra000269.1-P	Field mustard	nucleus	57.39	57.06
GSMUA_AchrUn_...	Banana	nucleus	49.43	56.49
Bra040188.1-P	Field mustard	nucleus, plastid	63.07	56.35
Bra015551.1-P	Field mustard	nucleus, plastid	63.07	56.06
GSMUA_Achr4P28760_001	Banana	nucleus	57.95	55.74
KXG38327	Sorghum	nucleus	70.45	55.61
Bra031552.1-P	Field mustard	nucleus	61.36	54.55
Zm00001d018433_P001	Maize	nucleus	75.57	53.85
HORVU1Hr1G041240.5	Barley	nucleus	69.32	53.74
Zm00001d051966_P001	Maize	nucleus	75.0	53.66
Os02t0811000-01	Rice	nucleus	75.57	53.63
GSMUA_Achr6P36540_001	Banana	nucleus	48.86	53.42
EES05986	Sorghum	nucleus	75.57	52.99
Bra021995.1-P	Field mustard	nucleus	53.98	52.49
TraesCS6A01G377300.1	Wheat	nucleus	74.43	51.98
TraesCS6B01G414700.1	Wheat	nucleus	74.43	51.98
TraesCS6D01G361900.1	Wheat	nucleus	74.43	51.98
Bra035066.1-P	Field mustard	nucleus	55.11	51.05
HORVU6Hr1G088790.1	Barley	nucleus	73.3	50.39
TraesCS1A01G154900.1	Wheat	nucleus	68.75	50.21
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	52.84	49.73
Bra021000.1-P	Field mustard	nucleus, plastid	53.98	49.22
Bra008382.1-P	Field mustard	nucleus	52.84	48.69
Bra013330.1-P	Field mustard	nucleus	53.98	48.47
Bra003637.1-P	Field mustard	nucleus	37.5	41.25
Bra040137.1-P	Field mustard	nucleus, plastid	63.07	37.37

Protein Annotations

EnsemblPlants:Bra023738.1	EnsemblPlants:Bra023738.1-P	EnsemblPlantsGene:Bra023738	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008150	GO:GO:0009653	GO:GO:0090698	InterPro:ALOG_dom	InterPro:IPR006936
PANTHER:PTHR31165	PANTHER:PTHR31165:SF38	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002543D90
UniProt:M4E4N5	MapMan:35.1	:	:	:	:

Description

AT3G23290 (E=4e-072) LSH4 | LSH4 (LIGHT SENSITIVE HYPOCOTYLS 4)

Coordinates

chrA01:-:19480186..19481203

Molecular Weight (calculated)

19321.9 Da

IEP (calculated)

10.875

GRAVY (calculated)

-0.626

Length

176 amino acids

Sequence
(BLAST)

001: MIAAAAVTTS SSSSSSSSGG SATTQLSRYE NQKRRDWNTF GQYLRNHRPP LSLSRCGGAH VLEFLRYLDQ FGKTKVHTQL CPFFGHANPP APCACPLRQA
101: WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP PMPLPPPHSV ISSSPN

Best Arabidopsis Sequence Match ( AT3G23290.2 )
(BLAST)

001: MDHIIGFMGT TNMSHNTNLM IAAAATTTTT SSSSSSSSGG SGTNQLSRYE NQKRRDWNTF GQYLRNHRPP LSLSRCSGAH VLEFLRYLDQ FGKTKVHTHL
101: CPFFGHPNPP APCACPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP PPLPPAQPAI SSSPN

Arabidopsis Description

LSH4LSH4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHD2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.