Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025863_P001 | Maize | nucleus | 82.98 | 46.43 |
| Solyc09g025280.1.1 | Tomato | nucleus | 76.6 | 42.11 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 80.85 | 41.53 |
| Bra023738.1-P | Field mustard | plastid | 77.66 | 41.48 |
| KRH34151 | Soybean | plastid | 75.53 | 40.34 |
| PGSC0003DMT400026698 | Potato | nucleus | 78.72 | 40.0 |
| EES11114 | Sorghum | nucleus | 84.04 | 39.7 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 84.04 | 39.7 |
| KRG92413 | Soybean | nucleus | 80.85 | 39.58 |
| Zm00001d003057_P001 | Maize | nucleus | 84.04 | 39.5 |
| KRG97044 | Soybean | plastid | 76.6 | 39.34 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 84.04 | 39.3 |
| Os04t0516200-01 | Rice | nucleus | 84.04 | 39.11 |
| KRG95674 | Soybean | nucleus | 84.04 | 38.92 |
| KRH67397 | Soybean | nucleus | 84.04 | 38.92 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 82.98 | 38.81 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 82.98 | 38.81 |
| Os10t0478000-01 | Rice | nucleus | 84.04 | 38.73 |
| Zm00001d017263_P001 | Maize | nucleus | 84.04 | 38.73 |
| KRH32192 | Soybean | nucleus | 85.11 | 38.65 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 84.04 | 38.35 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 84.04 | 38.35 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 81.91 | 38.31 |
| KRH68792 | Soybean | plastid | 74.47 | 38.04 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 80.85 | 38.0 |
| CDY35523 | Canola | plastid | 78.72 | 37.95 |
| CDY69731 | Canola | plastid | 78.72 | 37.95 |
| KRH56293 | Soybean | nucleus | 85.11 | 37.91 |
| KRH34391 | Soybean | nucleus | 80.85 | 37.62 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 80.85 | 37.62 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 80.85 | 37.62 |
| KXG30661 | Sorghum | nucleus | 82.98 | 37.5 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 80.85 | 37.44 |
| AT3G23290.2 | Thale cress | plastid | 77.66 | 37.44 |
| KRG92633 | Soybean | nucleus | 75.53 | 37.37 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 80.85 | 37.25 |
| Bra014935.1-P | Field mustard | plastid | 78.72 | 37.19 |
| CDX77531 | Canola | plastid | 78.72 | 37.19 |
| CDX85083 | Canola | plastid | 78.72 | 37.19 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 75.53 | 37.17 |
| Zm00001d014032_P001 | Maize | nucleus | 82.98 | 37.14 |
| PGSC0003DMT400051692 | Potato | nucleus | 81.91 | 37.02 |
| Solyc09g090180.1.1 | Tomato | plastid | 81.91 | 37.02 |
| CDY52479 | Canola | nucleus, plastid | 74.47 | 36.84 |
| Os02t0623400-00 | Rice | nucleus | 81.91 | 36.84 |
| CDY05593 | Canola | nucleus, plastid | 74.47 | 36.65 |
| CDY52505 | Canola | nucleus, plastid | 74.47 | 36.65 |
| Zm00001d051143_P001 | Maize | nucleus | 78.72 | 36.63 |
| Zm00001d032696_P001 | Maize | nucleus | 82.98 | 36.62 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 73.4 | 36.32 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 73.4 | 36.13 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 73.4 | 35.94 |
| CDX86199 | Canola | plastid | 73.4 | 35.94 |
| CDY57024 | Canola | nucleus, plastid | 73.4 | 35.94 |
| Solyc06g083860.2.1 | Tomato | nucleus | 82.98 | 35.78 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 64.89 | 35.47 |
| Bra009997.1-P | Field mustard | plastid | 72.34 | 35.42 |
| CDY64755 | Canola | nucleus, plastid | 72.34 | 35.42 |
| KXG38327 | Sorghum | nucleus | 82.98 | 34.98 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 63.83 | 34.88 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 84.04 | 34.8 |
| Bra021707.1-P | Field mustard | nucleus | 79.79 | 34.56 |
| CDY15426 | Canola | nucleus | 79.79 | 34.56 |
| CDY57087 | Canola | nucleus | 79.79 | 34.56 |
| CDY57088 | Canola | nucleus | 79.79 | 34.56 |
| Bra018263.1-P | Field mustard | nucleus | 78.72 | 34.42 |
| CDY10790 | Canola | nucleus | 78.72 | 34.42 |
| CDY24755 | Canola | nucleus, plastid | 78.72 | 34.42 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 63.83 | 34.29 |
| CDY63294 | Canola | nucleus | 67.02 | 34.24 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 62.77 | 34.1 |
| PGSC0003DMT400029945 | Potato | nucleus | 65.96 | 33.88 |
| AT2G31160.1 | Thale cress | nucleus | 78.72 | 33.79 |
| CDY21126 | Canola | nucleus, plastid | 68.09 | 33.68 |
| CDY30000 | Canola | nucleus, plastid | 68.09 | 33.68 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 61.7 | 33.53 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 67.02 | 33.16 |
| CDX74186 | Canola | nucleus, plastid | 67.02 | 33.16 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 84.04 | 32.78 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 62.77 | 32.78 |
| CDY49331 | Canola | nucleus, plastid | 68.09 | 32.65 |
| CDY42932 | Canola | nucleus, plastid | 68.09 | 32.49 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 69.15 | 32.34 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 62.77 | 32.24 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 71.28 | 32.06 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 67.02 | 31.98 |
| Solyc05g055020.2.1 | Tomato | nucleus | 71.28 | 31.75 |
| Zm00001d051966_P001 | Maize | nucleus | 80.85 | 30.89 |
| Zm00001d018433_P001 | Maize | nucleus | 80.85 | 30.77 |
| Os02t0811000-01 | Rice | nucleus | 80.85 | 30.65 |
| EES05986 | Sorghum | nucleus | 80.85 | 30.28 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 80.85 | 30.16 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 80.85 | 30.16 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 80.85 | 30.16 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.94 | 29.87 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 78.72 | 28.91 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 55.32 | 28.11 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 55.32 | 27.66 |
| GSMUA_Achr6P08720_001 | Banana | nucleus | 55.32 | 26.4 |
| GSMUA_Achr11P... | Banana | nucleus | 48.94 | 26.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.06 | 25.81 |
| GSMUA_Achr11P... | Banana | nucleus | 54.26 | 25.63 |
| GSMUA_Achr5P00260_001 | Banana | nucleus | 55.32 | 25.49 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 43.62 | 25.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.26 | 24.52 |
| GSMUA_Achr3P10070_001 | Banana | nucleus | 56.38 | 24.42 |
| GSMUA_Achr11P... | Banana | nucleus | 57.45 | 24.32 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 41.49 | 24.22 |
| GSMUA_Achr8P01890_001 | Banana | nucleus | 51.06 | 23.65 |
| GSMUA_Achr7P18300_001 | Banana | nucleus | 51.06 | 23.3 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 51.06 | 23.19 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 52.13 | 23.11 |
| GSMUA_Achr10P... | Banana | nucleus | 50.0 | 23.04 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 68.09 | 21.55 |
| GSMUA_Achr11P... | Banana | nucleus | 44.68 | 20.69 |
| GSMUA_Achr5P29450_001 | Banana | cytosol, nucleus, plastid | 54.26 | 19.03 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 50.0 | 16.55 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P22780_001 | EnsemblPlants:GSMUA_Achr11T22780_001 | EnsemblPlantsGene:GSMUA_Achr11G22780_001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF36 | PFAM:PF04852 | PFscan:PS51697 | SEG:seg | UniParc:UPI000296B92C | UniProt:M0RUK8 |
| MapMan:35.1 | : | : | : | : | : |
Description
DUF640 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G22780_001]
Coordinates
chr11:-:22945827..22946111
Molecular Weight (calculated)
10458.6 Da
IEP (calculated)
10.398
GRAVY (calculated)
-0.920
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MCPFFGHPNP PAPCPCPLRQ AWGSLDALIG RLRAAYEENG GKPESNPFGA RAVRLYLREV REIQSKARGV SYEKKKRKKP QQDQQHPPPP PAAA
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.