Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001109.1-P | Field mustard | nucleus, plastid | 100.0 | 100.0 |
| CDY63294 | Canola | nucleus | 92.11 | 95.11 |
| CDY49331 | Canola | nucleus, plastid | 86.32 | 83.67 |
| CDY42932 | Canola | nucleus, plastid | 86.32 | 83.25 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 84.74 | 80.1 |
| CDY21126 | Canola | nucleus, plastid | 76.84 | 76.84 |
| CDY05593 | Canola | nucleus, plastid | 76.32 | 75.92 |
| CDY30000 | Canola | nucleus, plastid | 75.79 | 75.79 |
| CDY52505 | Canola | nucleus, plastid | 75.79 | 75.39 |
| CDY52479 | Canola | nucleus, plastid | 75.26 | 75.26 |
| CDX86199 | Canola | plastid | 75.79 | 75.0 |
| CDY57024 | Canola | nucleus, plastid | 75.26 | 74.48 |
| CDY64755 | Canola | nucleus, plastid | 74.74 | 73.96 |
| KRH34151 | Soybean | plastid | 62.63 | 67.61 |
| GSMUA_Achr11P... | Banana | nucleus | 33.16 | 67.02 |
| KRG92633 | Soybean | nucleus | 63.16 | 63.16 |
| Zm00001d025863_P001 | Maize | nucleus | 55.79 | 63.1 |
| KRG97044 | Soybean | plastid | 60.53 | 62.84 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 63.16 | 62.83 |
| KRH68792 | Soybean | plastid | 58.95 | 60.87 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 52.11 | 60.0 |
| CDY69731 | Canola | plastid | 61.05 | 59.49 |
| CDX77531 | Canola | plastid | 62.11 | 59.3 |
| CDX85083 | Canola | plastid | 62.11 | 59.3 |
| CDY35523 | Canola | plastid | 60.53 | 58.97 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 55.79 | 58.89 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 64.21 | 58.37 |
| Solyc05g055020.2.1 | Tomato | nucleus | 64.21 | 57.82 |
| PGSC0003DMT400029945 | Potato | nucleus | 55.26 | 57.38 |
| CDY02038 | Canola | cytosol | 49.47 | 57.32 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 51.05 | 56.4 |
| CDY32697 | Canola | nucleus | 51.58 | 55.37 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 57.89 | 55.0 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 58.42 | 54.95 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 58.42 | 54.95 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 50.0 | 54.91 |
| EES11114 | Sorghum | nucleus | 57.37 | 54.77 |
| Zm00001d003057_P001 | Maize | nucleus | 57.37 | 54.5 |
| Os04t0516200-01 | Rice | nucleus | 57.89 | 54.46 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 58.42 | 54.41 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 49.47 | 54.34 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 56.84 | 54.27 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 57.37 | 54.23 |
| CDY59510 | Canola | nucleus | 51.58 | 54.14 |
| Zm00001d017263_P001 | Maize | nucleus | 57.89 | 53.92 |
| KXG30661 | Sorghum | nucleus | 58.95 | 53.85 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 56.84 | 53.73 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 56.84 | 53.73 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 49.47 | 53.71 |
| Zm00001d051143_P001 | Maize | nucleus | 56.84 | 53.47 |
| Os10t0478000-01 | Rice | nucleus | 57.37 | 53.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.16 | 53.25 |
| CDX77619 | Canola | cytosol | 27.37 | 53.06 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 47.89 | 52.91 |
| CDY47983 | Canola | nucleus | 48.95 | 52.84 |
| CDY55387 | Canola | nucleus | 49.47 | 52.81 |
| CDY10790 | Canola | nucleus | 59.47 | 52.56 |
| CDY24755 | Canola | nucleus, plastid | 59.47 | 52.56 |
| CDY14848 | Canola | nucleus | 48.95 | 52.54 |
| CDY15426 | Canola | nucleus | 60.0 | 52.53 |
| CDY32977 | Canola | nucleus, plastid | 50.53 | 52.46 |
| CDY61050 | Canola | nucleus | 50.53 | 52.46 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 56.84 | 52.43 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 56.84 | 52.43 |
| Zm00001d014032_P001 | Maize | nucleus | 57.89 | 52.38 |
| CDY57087 | Canola | nucleus | 59.47 | 52.07 |
| CDY57088 | Canola | nucleus | 59.47 | 52.07 |
| CDY06675 | Canola | nucleus, plastid | 54.21 | 52.02 |
| CDY10247 | Canola | nucleus, plastid | 54.21 | 52.02 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 44.74 | 51.83 |
| Os02t0623400-00 | Rice | nucleus | 56.84 | 51.67 |
| Zm00001d032696_P001 | Maize | nucleus | 57.89 | 51.64 |
| CDX94980 | Canola | nucleus | 53.68 | 51.52 |
| CDY09940 | Canola | nucleus | 53.68 | 51.52 |
| CDY20312 | Canola | nucleus | 53.68 | 51.52 |
| CDY52287 | Canola | nucleus | 53.68 | 51.52 |
| CDY59064 | Canola | nucleus | 53.68 | 51.52 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 48.95 | 50.82 |
| CDX88480 | Canola | nucleus | 49.47 | 50.81 |
| CDY06030 | Canola | nucleus | 47.89 | 50.28 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 49.47 | 50.27 |
| CDX87760 | Canola | nucleus | 47.37 | 50.0 |
| KXG38327 | Sorghum | nucleus | 58.42 | 49.78 |
| CDY01557 | Canola | nucleus | 50.0 | 49.74 |
| CDX87432 | Canola | nucleus | 49.47 | 49.47 |
| CDX76510 | Canola | nucleus | 50.0 | 49.22 |
| CDY67351 | Canola | nucleus | 50.0 | 49.22 |
| CDY34056 | Canola | nucleus | 49.47 | 48.7 |
| CDX78877 | Canola | nucleus | 50.0 | 48.47 |
| CDY14588 | Canola | nucleus | 48.42 | 48.42 |
| CDY26881 | Canola | nucleus | 48.42 | 48.17 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 57.37 | 48.02 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 38.95 | 45.96 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 56.84 | 44.81 |
| Zm00001d051966_P001 | Maize | nucleus | 57.89 | 44.72 |
| Zm00001d018433_P001 | Maize | nucleus | 57.37 | 44.13 |
| Os02t0811000-01 | Rice | nucleus | 57.37 | 43.95 |
| EES05986 | Sorghum | nucleus | 57.89 | 43.82 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 57.89 | 43.65 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 57.89 | 43.65 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 57.89 | 43.65 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 56.84 | 42.19 |
Protein Annotations
| EnsemblPlants:CDX74186 | EnsemblPlantsGene:GSBRNA2T00111951001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF16 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDX74186 | ProteinID:CDX74186.1 | SEG:seg | UniParc:UPI0002540959 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA03g28610D
Coordinates
chrLK031800:+:1692409..1692981
Molecular Weight (calculated)
21523.5 Da
IEP (calculated)
9.868
GRAVY (calculated)
-0.796
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSISQNHNN KNPSTTLSAQ PPTTSRYENQ KRRDWNTFCQ YLRNHRPPLS LPSCSGAHVI EFLRYLDQFG KTKVHNQNCA FFGLPDPPEP CPCPLRQAWG
101: SLDALIGRLR AAYEENGGAP EISPFGSSSV RIFLREVRDF QAKARGVSYE KKRKRVNNKQ ITQSCLQPPL HTAALAQGQP MMAKYHHSET
101: SLDALIGRLR AAYEENGGAP EISPFGSSSV RIFLREVRDF QAKARGVSYE KKRKRVNNKQ ITQSCLQPPL HTAALAQGQP MMAKYHHSET
001: MDLISQNHNN RNPNTSLSTQ TPSSFSSPPS SSRYENQKRR DWNTFCQYLR NHHPPLSLAS CSGAHVLDFL RYLDQFGKTK VHHQNCAFFG LPNPPAPCPC
101: PLRQAWGSLD ALIGRLRAAY EENGGAPETS PFGSRSVRIF LREVRDFQAK SRGVSYEKKR KRVNNKQITQ SQPQSQPPLP QQPQQEQGQS MMANYHHGAT
201: Q
101: PLRQAWGSLD ALIGRLRAAY EENGGAPETS PFGSRSVRIF LREVRDFQAK SRGVSYEKKR KRVNNKQITQ SQPQSQPPLP QQPQQEQGQS MMANYHHGAT
201: Q
Arabidopsis Description
LSH2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M836]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.