Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 38.73 | 84.04 |
| Zm00001d014032_P001 | Maize | nucleus | 83.33 | 80.95 |
| Zm00001d032696_P001 | Maize | nucleus | 81.86 | 78.4 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 78.43 | 77.67 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 78.43 | 77.67 |
| KXG38327 | Sorghum | nucleus | 82.84 | 75.78 |
| Os04t0516200-01 | Rice | nucleus | 74.02 | 74.75 |
| KRH34151 | Soybean | plastid | 60.29 | 69.89 |
| Bra023738.1-P | Field mustard | plastid | 59.31 | 68.75 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 76.47 | 68.72 |
| Solyc09g025280.1.1 | Tomato | nucleus | 57.35 | 68.42 |
| Os02t0623400-00 | Rice | nucleus | 69.12 | 67.46 |
| KRG97044 | Soybean | plastid | 59.8 | 66.67 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 78.43 | 66.39 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 59.31 | 66.12 |
| AT3G23290.2 | Thale cress | plastid | 61.76 | 64.62 |
| CDY69731 | Canola | plastid | 61.76 | 64.62 |
| CDY35523 | Canola | plastid | 61.76 | 64.62 |
| KRH68792 | Soybean | plastid | 57.84 | 64.13 |
| KRG92413 | Soybean | nucleus | 60.29 | 64.06 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 53.92 | 63.95 |
| Bra014935.1-P | Field mustard | plastid | 62.25 | 63.82 |
| CDX77531 | Canola | plastid | 62.25 | 63.82 |
| CDX85083 | Canola | plastid | 62.25 | 63.82 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 62.75 | 63.68 |
| KRG95674 | Soybean | nucleus | 63.24 | 63.55 |
| PGSC0003DMT400026698 | Potato | nucleus | 57.35 | 63.24 |
| KRG92633 | Soybean | nucleus | 58.82 | 63.16 |
| KRH67397 | Soybean | nucleus | 62.75 | 63.05 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 58.82 | 62.83 |
| CDY52479 | Canola | nucleus, plastid | 58.33 | 62.63 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 52.94 | 62.43 |
| KRH34391 | Soybean | nucleus | 61.27 | 61.88 |
| KRH32192 | Soybean | nucleus | 62.75 | 61.84 |
| Os02t0166800-01 | Rice | nucleus | 57.84 | 61.78 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 61.27 | 61.58 |
| CDY57024 | Canola | nucleus, plastid | 57.84 | 61.46 |
| CDX86199 | Canola | plastid | 57.84 | 61.46 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 56.86 | 61.05 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 57.35 | 60.94 |
| CDY05593 | Canola | nucleus, plastid | 56.86 | 60.73 |
| CDY52505 | Canola | nucleus, plastid | 56.86 | 60.73 |
| KRH56293 | Soybean | nucleus | 62.75 | 60.66 |
| Solyc09g090180.1.1 | Tomato | plastid | 61.76 | 60.58 |
| Bra009997.1-P | Field mustard | plastid | 56.86 | 60.42 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 56.37 | 60.21 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 51.47 | 60.0 |
| CDY64755 | Canola | nucleus, plastid | 56.37 | 59.9 |
| PGSC0003DMT400051692 | Potato | nucleus | 60.78 | 59.62 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 50.49 | 59.54 |
| CDY63294 | Canola | nucleus | 52.45 | 58.15 |
| CDY21126 | Canola | nucleus, plastid | 53.92 | 57.89 |
| CDX74186 | Canola | nucleus, plastid | 53.43 | 57.37 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 53.43 | 57.37 |
| CDY30000 | Canola | nucleus, plastid | 53.43 | 57.37 |
| CDY10790 | Canola | nucleus | 60.29 | 57.21 |
| Bra018263.1-P | Field mustard | nucleus | 60.29 | 57.21 |
| Solyc06g083860.2.1 | Tomato | nucleus | 60.78 | 56.88 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 50.98 | 56.83 |
| CDY24755 | Canola | nucleus, plastid | 59.8 | 56.74 |
| PGSC0003DMT400029945 | Potato | nucleus | 50.49 | 56.28 |
| Bra021707.1-P | Field mustard | nucleus | 59.8 | 56.22 |
| CDY57088 | Canola | nucleus | 59.8 | 56.22 |
| CDY57087 | Canola | nucleus | 59.8 | 56.22 |
| CDY15426 | Canola | nucleus | 59.8 | 56.22 |
| CDY49331 | Canola | nucleus, plastid | 53.92 | 56.12 |
| CDY42932 | Canola | nucleus, plastid | 53.92 | 55.84 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 54.9 | 55.72 |
| AT2G31160.1 | Thale cress | nucleus | 59.8 | 55.71 |
| Os01t0828900-00 | Rice | nucleus, plastid | 57.84 | 55.66 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 49.02 | 55.56 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 53.43 | 55.33 |
| Os02t0811000-01 | Rice | nucleus | 65.2 | 53.63 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 53.43 | 52.15 |
| Solyc05g055020.2.1 | Tomato | nucleus | 52.94 | 51.18 |
| Os05t0472000-00 | Rice | nucleus | 58.33 | 50.0 |
| Os06t0672400-01 | Rice | nucleus | 61.27 | 45.13 |
| Os05t0347400-01 | Rice | nucleus | 59.8 | 42.96 |
| Os07t0139300-01 | Rice | nucleus | 51.47 | 38.04 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 53.92 | 37.04 |
| Os08t0248000-00 | Rice | nucleus | 35.29 | 35.64 |
Protein Annotations
| MapMan:35.1 | EntrezGene:9266624 | ProteinID:AAG13584.1 | ProteinID:AAP54281.1 | EMBL:AB512494 | InterPro:ALOG_dom |
| ProteinID:BAH94937.1 | ProteinID:BAT11310.1 | ProteinID:EAZ16425.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0090698 |
| InterPro:IPR006936 | EnsemblPlantsGene:Os10g0478000 | EnsemblPlants:Os10t0478000-01 | PFAM:PF04852 | PFscan:PS51697 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF15 | UniProt:Q7XDD0 | UniParc:UPI00000A74D0 | RefSeq:XP_015613424.1 | SEG:seg | : |
Description
G1 LIKE PROTEIN 5Transcriptional regulator, Regulator of meristem activity, Regulation of inflorescence development (Os10t0478000-01)
Coordinates
chr10:-:17888297..17889724
Molecular Weight (calculated)
21836.6 Da
IEP (calculated)
10.210
GRAVY (calculated)
-0.709
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFVAHAAAP DSPHSDSGGG GGGMATGATS ASAAGASPSR YESQKRRDWN TFGQYLRNHR PPLSLARCSG AHVLEFLRYL DQFGKTKVHA PACPFFGHPA
101: PPAPCPCPLR QAWGSLDALV GRLRAAYEEN GGRPENNPFG ARAVRLYLRE VREHQARARG VSYEKKKRKK PPHPSSAAAA HDDAANGALH HHHHMPPPPP
201: GAAA
101: PPAPCPCPLR QAWGSLDALV GRLRAAYEEN GGRPENNPFG ARAVRLYLRE VREHQARARG VSYEKKKRKK PPHPSSAAAA HDDAANGALH HHHHMPPPPP
201: GAAA
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.