Factsheet for Solyc09g090180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044213	Potato	mitochondrion	95.19	97.54
GSMUA_Achr11P...	Banana	nucleus	37.02	81.91
Bra023738.1-P	Field mustard	plastid	66.83	78.98
Solyc09g025280.1.1	Tomato	nucleus	62.02	75.44
CDY35523	Canola	plastid	68.75	73.33
CDY69731	Canola	plastid	68.75	73.33
AT3G23290.2	Thale cress	plastid	67.79	72.31
Zm00001d025863_P001	Maize	nucleus	58.17	72.02
Bra014935.1-P	Field mustard	plastid	67.79	70.85
CDX77531	Canola	plastid	67.79	70.85
CDX85083	Canola	plastid	67.79	70.85
GSMUA_Achr5P03870_001	Banana	nucleus	53.37	64.16
TraesCS6B01G256500.1	Wheat	nucleus	61.54	64.0
GSMUA_Achr5P18640_001	Banana	nucleus	52.88	63.95
Os04t0516200-01	Rice	nucleus	62.02	63.86
HORVU2Hr1G089190.1	Barley	nucleus	61.06	63.82
EES11114	Sorghum	nucleus	61.06	63.82
TraesCS2D01G378900.1	Wheat	nucleus	61.54	63.68
Zm00001d003057_P001	Maize	nucleus	61.06	63.5
TraesCS6D01G209700.1	Wheat	nucleus	61.54	63.37
TraesCS6A01G225000.1	Wheat	nucleus	61.54	63.37
Solyc06g083860.2.1	Tomato	nucleus	66.35	63.3
Zm00001d017263_P001	Maize	nucleus	62.02	63.24
TraesCS2B01G399800.1	Wheat	nucleus	61.06	63.18
TraesCS2A01G382500.1	Wheat	nucleus	61.06	63.18
Solyc02g069510.1.1	Tomato	nucleus	54.81	62.98
HORVU6Hr1G058340.2	Barley	nucleus	61.54	62.75
GSMUA_Achr5P14570_001	Banana	nucleus	51.92	62.43
Zm00001d051143_P001	Maize	nucleus	60.58	62.38
Os02t0623400-00	Rice	nucleus	62.5	62.2
Os10t0478000-01	Rice	nucleus	60.58	61.76
KXG30661	Sorghum	nucleus	61.54	61.54
TraesCS1D01G153700.1	Wheat	nucleus	60.58	61.16
TraesCS1B01G172100.1	Wheat	nucleus	60.58	61.16
Solyc07g062470.2.1	Tomato	nucleus	42.79	60.54
Zm00001d014032_P001	Maize	nucleus	61.06	60.48
Solyc04g009980.2.1	Tomato	nucleus, plastid	51.92	60.0
GSMUA_Achr1P09270_001	Banana	nucleus	49.52	59.88
Zm00001d032696_P001	Maize	nucleus	61.06	59.62
GSMUA_Achr4P21940_001	Banana	nucleus	50.0	59.43
Solyc02g076820.2.1	Tomato	plastid	53.37	57.81
GSMUA_AchrUn_...	Banana	nucleus	42.79	57.79
KXG38327	Sorghum	nucleus	61.54	57.4
GSMUA_Achr4P28760_001	Banana	nucleus	50.0	56.83
HORVU1Hr1G041240.5	Barley	nucleus	61.06	55.95
GSMUA_Achr6P36540_001	Banana	nucleus	43.27	55.9
Solyc10g008000.1.1	Tomato	nucleus	47.6	55.62
GSMUA_Achr1P05650_001	Banana	nucleus	43.75	55.49
Solyc05g055020.2.1	Tomato	nucleus	56.25	55.45
Zm00001d051966_P001	Maize	nucleus	64.42	54.47
Zm00001d018433_P001	Maize	nucleus	63.94	53.85
Solyc12g014260.1.1	Tomato	nucleus	52.88	53.66
Solyc06g082210.1.1	Tomato	nucleus	57.21	53.6
EES05986	Sorghum	nucleus	64.42	53.39
TraesCS6B01G414700.1	Wheat	nucleus	64.42	53.17
TraesCS6A01G377300.1	Wheat	nucleus	64.42	53.17
TraesCS6D01G361900.1	Wheat	nucleus	64.42	53.17
Os02t0811000-01	Rice	nucleus	62.98	52.82
TraesCS1A01G154900.1	Wheat	nucleus	60.58	52.28
HORVU6Hr1G088790.1	Barley	nucleus	63.46	51.56
Solyc10g007310.1.1	Tomato	plastid	51.92	50.7

Protein Annotations

MapMan:35.1	InterPro:ALOG_dom	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299	GO:GO:0009416
GO:GO:0009628	GO:GO:0009653	GO:GO:0009987	GO:GO:0090698	InterPro:IPR006936	UniProt:K4CW44
PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165	PANTHER:PTHR31165:SF36	EnsemblPlantsGene:Solyc09g090180.1	EnsemblPlants:Solyc09g090180.1.1
UniParc:UPI000276CB66	SEG:seg	:	:	:	:

Description

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Source:Projected from Arabidopsis thaliana (AT3G23290) UniProtKB/Swiss-Prot;Acc:Q9LW68]

Coordinates

chr9:-:69714122..69714748

Molecular Weight (calculated)

23474.3 Da

IEP (calculated)

10.214

GRAVY (calculated)

-1.055

Length

208 amino acids

Sequence
(BLAST)

001: MEHNQEVDSP NSVIINHHHH HNHNLDNNSM TMLAGNNNNN NNNSYLASSS SNSPTTLSRY ENQKRRDWNT FGQYLRNHRP PLSLTRCSGA HVLEFLRYLD
101: QFGKTKVHTQ LCPFFGHPNP PAPCPCPLRQ AWGSLDALIG RLRAAYEENG GKPETNPFGA RAVRLYLREV RDSQAKARGI SYEKKKRKKP NPQHSSSSSL
201: PPPNGNSS

Best Arabidopsis Sequence Match ( AT3G23290.2 )
(BLAST)

001: MDHIIGFMGT TNMSHNTNLM IAAAATTTTT SSSSSSSSGG SGTNQLSRYE NQKRRDWNTF GQYLRNHRPP LSLSRCSGAH VLEFLRYLDQ FGKTKVHTHL
101: CPFFGHPNPP APCACPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP PPLPPAQPAI SSSPN

Arabidopsis Description

LSH4LSH4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHD2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.