Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400018295 | Potato | nucleus | 89.8 | 69.11 |
| Solyc12g014260.1.1 | Tomato | nucleus | 77.55 | 55.61 |
| KRH27347 | Soybean | nucleus | 69.39 | 55.43 |
| Solyc10g007310.1.1 | Tomato | plastid | 76.87 | 53.05 |
| Solyc10g008000.1.1 | Tomato | nucleus | 63.27 | 52.25 |
| KRH21973 | Soybean | nucleus | 68.71 | 52.06 |
| Solyc02g076820.2.1 | Tomato | plastid | 67.35 | 51.56 |
| Solyc09g025280.1.1 | Tomato | nucleus | 58.5 | 50.29 |
| VIT_19s0014g01350.t01 | Wine grape | nucleus | 72.11 | 48.18 |
| Solyc02g069510.1.1 | Tomato | nucleus | 57.14 | 46.41 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 55.78 | 45.56 |
| Solyc09g090180.1.1 | Tomato | plastid | 60.54 | 42.79 |
| Solyc05g055020.2.1 | Tomato | nucleus | 57.82 | 40.28 |
| Solyc06g083860.2.1 | Tomato | nucleus | 57.82 | 38.99 |
| Solyc06g082210.1.1 | Tomato | nucleus | 57.82 | 38.29 |
Protein Annotations
| EnsemblPlants:Solyc07g062470.2.1 | EnsemblPlantsGene:Solyc07g062470.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 |
| GO:GO:0009628 | GO:GO:0009987 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF9 |
| PFAM:PF04852 | PFscan:PS51697 | UniParc:UPI000276B678 | UniProt:K4CGT0 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr7:-:65191291..65194319
Molecular Weight (calculated)
16896.1 Da
IEP (calculated)
8.628
GRAVY (calculated)
-0.601
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLTQSDHHH QLSPPPQLSR YESQKRRDWN TFGQYLKNHK PPVPLPQCNY NHVLDFLRYL DQFGKTKVHL NGCVFFGQVE QVGPCTCPLR QAWGSLDALI
101: GRLRAAYEEN GGLQETNPFA NSAIRIYLRE ARADEDLKLR INSIAFA
101: GRLRAAYEEN GGLQETNPFA NSAIRIYLRE ARADEDLKLR INSIAFA
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
Arabidopsis Description
LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.