CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21973	Soybean	nucleus	96.2	91.24
KRH27046	Soybean	nucleus	71.74	75.43
KRH42865	Soybean	plastid	66.85	73.65
KRH22284	Soybean	nucleus	63.04	72.5
KRH25774	Soybean	nucleus	67.93	70.62
KRH55744	Soybean	nucleus	68.48	70.39
KRH21273	Soybean	nucleus	68.48	69.61
Solyc07g062470.2.1	Tomato	nucleus	55.43	69.39
KRH11015	Soybean	nucleus	67.93	69.06
PGSC0003DMT400018295	Potato	nucleus	69.02	66.49
PGSC0003DMT400054899	Potato	nucleus	74.46	66.18
VIT_19s0014g01350.t01	Wine grape	nucleus	76.63	64.09
Solyc10g007310.1.1	Tomato	plastid	73.91	63.85
AT1G16910.1	Thale cress	cytosol	55.43	62.2
CDX88480	Canola	nucleus	61.41	61.08
Bra035066.1-P	Field mustard	nucleus	61.41	59.47
CDX87432	Canola	nucleus	61.41	59.47
KRH34151	Soybean	plastid	55.98	58.52
CDY14588	Canola	nucleus	60.33	58.42
CDY26881	Canola	nucleus	60.33	58.12
Bra008382.1-P	Field mustard	nucleus	59.78	57.59
AT1G78815.1	Thale cress	nucleus	60.87	57.44
KRG92413	Soybean	nucleus	58.7	56.25
KRG97044	Soybean	plastid	55.43	55.74
KRG92633	Soybean	nucleus	55.98	54.21
KRH68792	Soybean	plastid	53.8	53.8
KRH34391	Soybean	nucleus	58.15	52.97
KRH67397	Soybean	nucleus	56.52	51.23
KRG95674	Soybean	nucleus	56.52	51.23
KRH32192	Soybean	nucleus	56.52	50.24
KRH56293	Soybean	nucleus	55.98	48.82
Bra003637.1-P	Field mustard	nucleus	40.76	46.88
KRH17088	Soybean	nucleus	54.89	46.33
KRH72732	Soybean	nucleus	54.35	45.66
KRH58368	Soybean	nucleus	58.15	45.34
KRH30185	Soybean	nucleus	56.52	44.26
KRG98226	Soybean	nucleus	55.43	43.97
KRH42251	Soybean	plastid	58.15	43.32

Protein Annotations

EntrezGene:100806493	MapMan:35.1	EMBL:ACUP02007798	InterPro:ALOG_dom	EnsemblPlantsGene:GLYMA_12G229500	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	InterPro:IPR006936
UniProt:K7LWG8	EnsemblPlants:KRH27347	ProteinID:KRH27347	ProteinID:KRH27347.1	ProteinID:KRH27348.1	PFAM:PF04852
PFscan:PS51697	PANTHER:PTHR31165	PANTHER:PTHR31165:SF9	UniParc:UPI000233CBC0	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:-:38961131..38963518

Molecular Weight (calculated)

20699.3 Da

IEP (calculated)

10.209

GRAVY (calculated)

-0.995

Length

184 amino acids

Sequence
(BLAST)

001: MSSKGKEVAE GSSTTRPSHG GDDDHHHNQQ QQLPLSRYES QKRRDWNTFG QYLRNQRPPV ALSQCSSNHV LEFLRYLDQF GKTKVHSQGC LFFGQTEPPG
101: PCTCPLRQAW GSLDALIGRL RAAYEENGGL PETNPFASGA IRVYLREVRD SQSKARGIPY KKKKKKRNVI KPNGDTSSSN LPMQ

Best Arabidopsis Sequence Match ( AT2G42610.1 )
(BLAST)

001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS

Arabidopsis Description

LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.