Factsheet for Bra003637.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035066.1-P	Field mustard	nucleus	77.5	65.26
AT1G78815.1	Thale cress	nucleus	77.5	63.59
Bra008382.1-P	Field mustard	nucleus	73.75	61.78
Bra016865.1-P	Field mustard	nucleus	46.88	42.61
Bra000269.1-P	Field mustard	nucleus	45.62	41.24
KRH27347	Soybean	nucleus	46.88	40.76
Bra004711.1-P	Field mustard	nucleus	42.5	40.72
KRH21973	Soybean	nucleus	48.75	40.21
Solyc12g014260.1.1	Tomato	nucleus	50.62	39.51
PGSC0003DMT400039811	Potato	nucleus	50.62	39.51
Bra018337.1-P	Field mustard	cytosol	40.0	38.79
Bra021000.1-P	Field mustard	nucleus, plastid	45.62	37.82
Bra023738.1-P	Field mustard	plastid	41.25	37.5
Bra013330.1-P	Field mustard	nucleus	45.62	37.24
Bra021995.1-P	Field mustard	nucleus	41.25	36.46
VIT_19s0014g01350.t01	Wine grape	nucleus	50.0	36.36
Bra001109.1-P	Field mustard	nucleus, plastid	42.5	35.79
Bra020610.1-P	Field mustard	nucleus, plastid	42.5	35.6
Bra036134.1-P	Field mustard	nucleus, plastid	42.5	35.42
Bra009997.1-P	Field mustard	plastid	41.88	34.9
Bra014935.1-P	Field mustard	plastid	43.12	34.67
Bra020365.1-P	Field mustard	nucleus	38.75	34.25
Bra015551.1-P	Field mustard	nucleus, plastid	41.88	33.84
Bra031552.1-P	Field mustard	nucleus	41.25	33.33
Bra002642.1-P	Field mustard	nucleus, plastid	37.5	32.79
Bra040188.1-P	Field mustard	nucleus, plastid	40.0	32.49
Bra021707.1-P	Field mustard	nucleus	42.5	31.34
Bra018263.1-P	Field mustard	nucleus	41.88	31.16
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	35.62	30.48
Bra040137.1-P	Field mustard	nucleus, plastid	40.0	21.55

Protein Annotations

EnsemblPlants:Bra003637.1	EnsemblPlants:Bra003637.1-P	EnsemblPlantsGene:Bra003637	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF37	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI000254144F	UniProt:M4CHF4
MapMan:35.1	:	:	:	:	:

Description

AT1G78815 (E=2e-031) LSH7 | LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)

Coordinates

chrA07:+:14182161..14182737

Molecular Weight (calculated)

17917.8 Da

IEP (calculated)

10.508

GRAVY (calculated)

-1.218

Length

160 amino acids

Sequence
(BLAST)

001: MASPSNKGKN IAEGSTSEQP QPQPQPQQPQ PPPNSPALSR YESQKRRDWN TLERQRFMHM DVFSSDKLNQ QDSVTVHQAW GSLDALIGRL RAAYEENGGF
101: PERNPFAGGG IRVFLREVRD SQAKARGVPY KKRKKKRGNP MKSHDVEDDT TGTSSSNLPS

Best Arabidopsis Sequence Match ( AT1G78815.1 )
(BLAST)

001: MASHSNKGKG IAEGSSQPQS QPQPQPHQPQ SPPNPPALSR YESQKRRDWN TFCQYLRNQQ PPVHISQCGS NHILDFLQYL DQFGKTKVHI HGCVFFGQVE
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS

Arabidopsis Description

LSH7Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.