Factsheet for Bra020365.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59510	Canola	nucleus	99.45	99.45
CDY32697	Canola	nucleus	97.24	99.44
AT5G58500.1	Thale cress	nucleus	86.19	85.71
Bra002642.1-P	Field mustard	nucleus, plastid	86.19	85.25
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	65.19	63.1
Bra023738.1-P	Field mustard	plastid	60.77	62.5
Bra018337.1-P	Field mustard	cytosol	55.8	61.21
Bra015551.1-P	Field mustard	nucleus, plastid	65.75	60.1
Bra031552.1-P	Field mustard	nucleus	65.19	59.6
Bra004711.1-P	Field mustard	nucleus	54.14	58.68
Bra016865.1-P	Field mustard	nucleus	55.8	57.39
Bra014935.1-P	Field mustard	plastid	62.43	56.78
KRH72732	Soybean	nucleus	68.51	56.62
Bra000269.1-P	Field mustard	nucleus	55.25	56.5
OQU83235	Sorghum	cytosol	54.7	56.25
KRH17088	Soybean	nucleus	66.3	55.05
VIT_06s0004g07090.t01	Wine grape	nucleus	70.17	54.98
PGSC0003DMT400078091	Potato	nucleus	66.85	54.26
Solyc06g082210.1.1	Tomato	nucleus	66.3	54.05
Bra036134.1-P	Field mustard	nucleus, plastid	56.91	53.65
Bra020610.1-P	Field mustard	nucleus, plastid	55.8	52.88
Bra009997.1-P	Field mustard	plastid	55.8	52.6
KRG98226	Soybean	nucleus	67.4	52.59
Bra018263.1-P	Field mustard	nucleus	62.43	52.56
Bra021707.1-P	Field mustard	nucleus	61.88	51.61
Bra001109.1-P	Field mustard	nucleus, plastid	54.14	51.58
Bra021995.1-P	Field mustard	nucleus	51.38	51.38
KRH30185	Soybean	nucleus	65.19	50.21
Bra040188.1-P	Field mustard	nucleus, plastid	53.59	49.24
Bra021000.1-P	Field mustard	nucleus, plastid	50.83	47.67
Bra035066.1-P	Field mustard	nucleus	49.72	47.37
Bra013330.1-P	Field mustard	nucleus	50.28	46.43
Bra008382.1-P	Field mustard	nucleus	48.62	46.07
GSMUA_Achr6P08720_001	Banana	nucleus	49.17	45.18
GSMUA_Achr7P18300_001	Banana	nucleus	50.83	44.66
TraesCS1B01G235800.1	Wheat	nucleus	65.19	41.7
Os05t0347400-01	Rice	nucleus	65.19	41.55
TraesCS1A01G222500.1	Wheat	nucleus	65.19	41.55
TraesCS1D01G224100.1	Wheat	nucleus	65.19	41.55
HORVU1Hr1G060250.1	Barley	nucleus	65.19	41.26
Zm00001d038016_P001	Maize	extracellular	65.75	39.53
Bra003637.1-P	Field mustard	nucleus	34.25	38.75
Zm00001d010507_P001	Maize	nucleus, plastid	65.19	37.34
EES19345	Sorghum	nucleus, plastid	65.75	36.62
Bra040137.1-P	Field mustard	nucleus, plastid	54.14	33.0

Protein Annotations

EnsemblPlants:Bra020365.1	EnsemblPlants:Bra020365.1-P	EnsemblPlantsGene:Bra020365	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF6	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002543003	UniProt:M4DV22
MapMan:35.1	:	:	:	:	:

Description

AT5G58500 (E=9e-077) LSH5 | LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)

Coordinates

chrA02:+:6420480..6421025

Molecular Weight (calculated)

19578.4 Da

IEP (calculated)

10.111

GRAVY (calculated)

-0.477

Length

181 amino acids

Sequence
(BLAST)

001: MEGETAAKAA GSSSSSPSRY ESQKRRDWNT VLQYLKNHKP PLSLSRCSGA HVIEFLKYLD QFGKTKVHVL ACPFFGEPNP PAQCTCPLRQ AWGSLDALIG
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRETQAKARG IPYDKKKRKR PLTAKATPNV DDGESSGGSG GAALVVSSTM I

Best Arabidopsis Sequence Match ( AT5G58500.1 )
(BLAST)

001: MEGETAAKAA ASSSSSPSRY ESQKRRDWNT FLQYLRNHKP PLNLSRCSGA HVLEFLKYLD QFGKTKVHAT ACPFFGQPNP PSQCTCPLKQ AWGSLDALIG
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV

Arabidopsis Description

LSH5LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.