Factsheet for Solyc06g082210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078091	Potato	nucleus	94.59	94.17
VIT_06s0004g07090.t01	Wine grape	nucleus	71.17	68.4
CDY32697	Canola	nucleus	54.05	67.8
CDY59510	Canola	nucleus	54.5	66.85
AT5G58500.1	Thale cress	nucleus	54.5	66.48
Bra020365.1-P	Field mustard	nucleus	54.05	66.3
CDY32977	Canola	nucleus, plastid	54.05	65.57
Bra002642.1-P	Field mustard	nucleus, plastid	53.6	65.03
CDY61050	Canola	nucleus	53.6	65.03
KRG98226	Soybean	nucleus	66.67	63.79
Solyc09g025280.1.1	Tomato	nucleus	49.1	63.74
KRH72732	Soybean	nucleus	62.16	63.01
KRH30185	Soybean	nucleus	66.67	62.98
KRH17088	Soybean	nucleus	61.71	62.84
OQU83235	Sorghum	cytosol	48.2	60.8
Solyc02g069510.1.1	Tomato	nucleus	48.65	59.67
Solyc07g062470.2.1	Tomato	nucleus	38.29	57.82
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	48.2	57.22
Solyc09g090180.1.1	Tomato	plastid	53.6	57.21
Solyc10g008000.1.1	Tomato	nucleus	44.59	55.62
CDY32978	Canola	cytosol, nucleus, plastid	46.85	55.62
Solyc04g009980.2.1	Tomato	nucleus, plastid	44.59	55.0
Solyc02g076820.2.1	Tomato	plastid	47.3	54.69
Solyc06g083860.2.1	Tomato	nucleus	50.9	51.83
GSMUA_Achr6P08720_001	Banana	nucleus	45.95	51.78
GSMUA_Achr7P18300_001	Banana	nucleus	47.3	50.97
Solyc05g055020.2.1	Tomato	nucleus	48.2	50.71
Solyc12g014260.1.1	Tomato	nucleus	45.5	49.27
Solyc10g007310.1.1	Tomato	plastid	46.4	48.36
TraesCS1B01G235800.1	Wheat	nucleus	58.56	45.94
HORVU1Hr1G060250.1	Barley	nucleus	59.01	45.8
TraesCS1A01G222500.1	Wheat	nucleus	58.56	45.77
TraesCS1D01G224100.1	Wheat	nucleus	58.56	45.77
Os05t0347400-01	Rice	nucleus	58.11	45.42
Zm00001d038016_P001	Maize	extracellular	58.56	43.19
Zm00001d010507_P001	Maize	nucleus, plastid	58.56	41.14
EES19345	Sorghum	nucleus, plastid	59.91	40.92

Protein Annotations

MapMan:35.1	InterPro:ALOG_dom	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299	GO:GO:0009416
GO:GO:0009628	GO:GO:0009987	InterPro:IPR006936	UniProt:K4CA80	PFAM:PF04852	PFscan:PS51697
PANTHER:PTHR31165	PANTHER:PTHR31165:SF6	EnsemblPlantsGene:Solyc06g082210.1	EnsemblPlants:Solyc06g082210.1.1	UniParc:UPI00027657A1	SEG:seg

Description

No Description!

Coordinates

chr6:+:48127875..48128543

Molecular Weight (calculated)

23334.2 Da

IEP (calculated)

9.585

GRAVY (calculated)

-0.663

Length

222 amino acids

Sequence
(BLAST)

001: MDSTSRVEQP DPNIVGSSEG GTGTSSASAV TEGGQSTTVS AAPPSRYESQ KRRDWNTFLQ YLRNHKPPLT LARCSGAHVI EFLKYLDQFG KTKVHVTGCP
101: YFGHPNPPAP CACPLKQAWG SLDALIGRLR AAYEENGGKP ESNPFGAKAV RIYLREVRES QAKARGIPYE KKKRKRPSTS SSVATAGSAV AAEGGSSSGG
201: GDGSGGDGVI GQQPPTDPNT TV

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.